506bf95ad3c5b7b055145515dcd5d46e *DESCRIPTION
b57f1f87aaa983fa238ab1a4c1216bf7 *INDEX
ee71d77f55b35a192ec33d1190db919b *Meta/Rd.rds
4befe5131167bf7d27fd1817593952d4 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
9c8598bb5ad92f141d32076fdc57dfb2 *Meta/hsearch.rds
6e2cd0374f37d031f1f225d86996ba40 *Meta/links.rds
b64a2ec0e538a6eeaa5df99391478193 *Meta/nsInfo.rds
13bfdeb0946778114055440cee30d14c *Meta/package.rds
b2aafabe6ced42d94d2a426eff296bcf *NAMESPACE
594c0d4f02b79551b089be17d3c83296 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/pwOmics
e5b4c60d68c5e82660aee16bdc31a532 *R/pwOmics.rdb
272f0cf8b2b67f7eaffc3185dbd7dfaa *R/pwOmics.rdx
62f1951990e4a48b8e9576a63de2a20d *data/OmicsExampleData.RData
0173a6340a384e4863487ec72a92f25c *extdata/Genelists/Genelist_biocarta.RData
8ce73f94923b113e1b37341189cc1fa5 *extdata/Genelists/Genelist_kegg.RData
3966ca5db8518cdf31378969a73c53e7 *extdata/Genelists/Genelist_nci.RData
9f57a879f9965936a1ae43478a963a13 *extdata/Genelists/Genelist_reactome.RData
8212a0c9e1ddcbd8edbc9037b606eca5 *extdata/TF_targets.txt
98b206046ac2e5a7723f5b450b628003 *extdata/chea-background.csv
e179e6d1de61e0f377aef5c587e79401 *extdata/mat_phospho.csv
cbff0dfb526df4226b5903b7443c06f6 *extdata/phospho_anno.txt
1bfd415c150f248004e280346bdcd2fc *extdata/phospho_reg_table.txt
52bfb1275c60a7e2e3b2bbbb1bb348fd *extdata/transcriptome_signif.txt
c0a168a7153f25de41757b7fd6b64472 *help/AnIndex
71cf4d0dc611bc8b81a3c92d16138369 *help/aliases.rds
ca73216ab2860dd3f359bd2032712b56 *help/paths.rds
b98e71bd4349090f94e6a609258b9ef2 *help/pwOmics.rdb
145be33377a418a7cc41027f62a65bb1 *help/pwOmics.rdx
f128d21619d87f26cf3ecc6be8f380ed *html/00Index.html
ea8fad8b3a6d6d3a232896effdf35d08 *html/OmicsExampleData.html
ca29d45ac2f0c9944f37179f95cdc1bc *html/PWidentallprots.html
14822efe1c665a9024c0543df955df1d *html/PWidentallprotssub.html
d535a857314beeecfc92d2fb9aec50dd *html/PWidenttps.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
fb9bea30cd36eddbf2baaee2c4cd2539 *html/SteinerTree_cons.html
31696ba18fbf39c06edaf30142cf63c1 *html/TFidentallgenes.html
9217a1e2fea40f9f8c241773c46f7830 *html/TFidenttps.html
0a700f7611815f876b53dd1af423fe7e *html/addFeedbackLoops.html
c29f891f87b67260db642d490560c4ae *html/clusterTimeProfiles.html
1480fdeb3732c5f4435d420c1141a8af *html/consDynamicNet.html
55fcb9e6f7b3a4211e14728b3b3d10bd *html/createBiopaxnew.html
33ec8133e347ca93cbf41a7493bf3439 *html/createIntIDs.html
64244a930131324942d1ae79d077284f *html/findSignalingAxes.html
16ef50d60ff5b3994a0230cf2172c840 *html/findxneighborsoverlap.html
4c28614f8d8075d1d1e30412e0937629 *html/findxnextneighbors.html
fd783692c4c9c3a9e7632c61929fff47 *html/genGenelists.html
0f1cdfd145c35bc8481da5de0835c53f *html/genGenelistssub.html
096b0fbb40d13af261c3f95e002e4e0e *html/genIntIDs.html
e00d572d00104c13e7d17f6a77f4cc94 *html/generate_DSSignalingBase.html
1b0dcd9c49ab5694e3ce9a48b5b057ce *html/genfullConsensusGraph.html
947db431fb14a7f8d99bd125ddbb7165 *html/getAlias_Ensemble.html
1374c7d21e4c94acad814ce7e7f6e637 *html/getAliasfromSTRINGIDs.html
e9549712a72b3240d2347d2d349da47b *html/getBiopaxModel.html
e52d9f988a9d92fb9e7476bd36ff15cb *html/getConsensusSTRINGIDs.html
9b0ca2d933e09a7c8def4e9e45e44487 *html/getDS_PWs.html
01ab9a182d18c6b04cb1ebc5b5914fd6 *html/getDS_TFs.html
39e27ed0ccc34a9a919c8bee378f601e *html/getDS_TGs.html
e20b8f13f773991c3aa1fe12f2b830ee *html/getFCsplines.html
5c335c2fd41cbe0f6774091d97c87463 *html/getGenesIntersection.html
c6b4b046e3409dc1c4155ccc650872f2 *html/getOmicsDataset.html
841800c61f22f7cddfec2cbe9ad4c5f0 *html/getOmicsTimepoints.html
f2ecebdbb35daaf5fec673f0a52ba29b *html/getOmicsallGeneIDs.html
107eb99a4398b809b05450f5c2a6b248 *html/getOmicsallProteinIDs.html
37cf16a6f9eaded0ca93e41ba4d9a1ba *html/getProteinIntersection.html
bbaf01641626b96ad186ca9a92066e78 *html/getSTRING_graph.html
57977c974df2e8940e6f75e3a03b3540 *html/getTFIntersection.html
1502869856d9ec656329b9b0c68ca3af *html/getUS_PWs.html
0834739eae17134483cf25a7fa20c614 *html/getUS_TFs.html
562b5e3a600c521b35046ed5183fafb2 *html/getUS_regulators.html
f5756e6abce692f98d8276aee0b89c99 *html/get_matching_transcripts.html
73aeec599ae83609833f064391aeb603 *html/getbipartitegraphInfo.html
5b850cf0509d57bbe2e7331f5e305861 *html/gettpIntersection.html
5375bb5e52e4ec8543ed55b5be657eed *html/identPWsofTFs.html
77d9deadae1315e6e411bf90eba0cf57 *html/identRegulators.html
8b7979183f495b19b29d98d9984c2020 *html/identTFTGsinPWs.html
16c37e8ff9ccc53d4075b942e19ff7b9 *html/identTFs.html
a07b8c82330bd869886c247b32b4d315 *html/identifyPR.html
b3f5d10861b496b509e1483284b1469a *html/identifyPWTFTGs.html
b49262822b301b965f70897594e0a98a *html/identifyPWs.html
99a6c2184be8bd89c4f9680b3db090aa *html/identifyRsofTFs.html
fd01b31634dde747503f80937ca731bb *html/identifyTFs.html
e6ced67887838097ab150f059600938f *html/infoConsensusGraph.html
1f3e8af6e516cbe4f86c46e2ab8ba9c9 *html/loadGenelists.html
866dbd145a60d80f49a85356d1811ab5 *html/loadPWs.html
eb60145ec8b24cd178b8a635dda0b02f *html/plotConsDynNet.html
7b1d982e73307ac8713f9c094124d181 *html/plotConsensusGraph.html
58b2b1f321933b23e9c1e80f69b97ecd *html/plotConsensusProfiles.html
1ef3379639f65b083d3727159a085690 *html/plotTimeProfileClusters.html
9dae851a5ce76ffc5bf77c02df52cd62 *html/predictFCvals.html
9d2f1bb32de8e3fe6ede0590e56845eb *html/preparePWinfo.html
a01c4c044382c567bd8854a50e144390 *html/print.OmicsData.html
902aeec3fc6a5624bfd39ff45433bdc3 *html/pwIntOmics-package.html
ea2820b1201548bb45ab2b460b782ac0 *html/readOmics.html
47bc56428242389d77e50da0cf52ec18 *html/readPWdata.html
61ecda6a8fa975af8b176e559f281d98 *html/readPhosphodata.html
b210008fb62f6e748730d89dfe1b8d5f *html/readTFdata.html
eb1de01011725a31d2f0b3033708ecf0 *html/readTFtargets.html
083d4094fb98c3349df86ac8d1b51854 *html/selectPWsofTFs.html
99b0bbd5fc2988e222646a19e1d75c9e *html/staticConsensusNet.html
ce890e7f6f4e7612d4b3bf7a820df0a8 *html/temp_correlations.html
122cc06fcca219f21a1377b9d567c51e *unitTests/provided_TF_genes.txt
ecdaa851b286ef5c57d39631fabf5bcb *unitTests/pwIntOmics_exported.R
fe0a87544ccf51eb8843918e086046c7 *unitTests/pwIntOmics_internal.R
