psygenet2r {psygenet2r} | R Documentation

## psygenet2r: Package to query PsyGeNET database and to perform comorbidity studies

### Description

psygenet2r has two categories of functions: querying functions and analysis and plotting functions.

### querying functions

The functions to retrieve data from PsyGeNET are psygenetDisease and psygenetGene. There are some other support functions like psygenetGeneSentences.

### analysis and plotting functions

The functions extract and extractSentences allows to retrieve the row data obtained from on-line resources. The functions `plot` and pantherGraphic draws a variety of charts to illustrate the obtained results. The function enrichedPD was built to perform enrichment studies on PsyGeNET data. Finally the function jaccardEstimation computes a Jaccard Index from a given input on PsyGeNET data.

[Package psygenet2r version 1.16.0 Index]