psygenetDiseaseSentences {psygenet2r} | R Documentation

## Query PsyGeNET for given disease(s) and extract the pmids sentences that report a gene-disease asssociation.

### Description

Given a disease or a disease list, retrives the pmids and sentences for each gene-disease association from PsyGeNET and creates an object of type `DataGeNET.Psy`.

### Usage

    psygenetDiseaseSentences(diseaseList, database = "ALL", verbose = FALSE)

### Arguments

`diseaseList` | Name or vector of names (that can be both code or uml) to specific diseases from PsyGeNET. The diseases non existing in PsyGeNET will be removed from the output.
`database` | Name of the database that will be queried. It can take the values `'psycur15'` to use data validated by experts for first release of PsyGeNET; `'psycur16'` to use data validated by experts for second release of PsyGeNET; or `'ALL'` to use both databases. Default `'ALL'`.
`verbose` | By default `FALSE`. Change it to `TRUE` to get a on-time log from the function.

### Value

An object of class `DataGeNET.Psy`

### Examples

    diseasesOfInterest <- c( "Bipolar Disorder","Depressive Disorder, Major" )
    psyDisSen <- psygenetDiseaseSentences( diseaseList = diseasesOfInterest,
                                           database = "ALL" )

[Package psygenet2r version 1.16.0 Index]