createOptimalSurvData {psichomics} | R Documentation

## Create survival data based on a PSI cutoff

### Description

Data is presented in the table for statistical analyses

### Usage

    createOptimalSurvData(eventPSI, clinical, censoring, event, timeStart,
      timeStop, match, patients, samples)

### Arguments

`eventPSI` | Numeric: alternative splicing quantification for multiple samples relative to a single splicing event
`clinical` | Data frame: clinical data
`censoring` | Character: censor using "left", "right", "interval" or "interval2"
`event` | Character: name of column containing time of the event of interest
`timeStart` | Character: name of column containing starting time of the interval or follow up time
`timeStop` | Character: name of column containing ending time of the interval (only relevant for interval censoring)
`match` | Matrix: match between samples and patients
`patients` | Character: patient identifiers (only required if the `clinical` argument is not handed)
`samples` | Character: samples to use when assigning values per patient (if `NULL`, all samples will be used)

### Value

Survival data including optimal PSI cutoff, minimal survival p-value and HTML element required to plot survival curves

[Package psichomics version 1.10.2 Index]