parseVastToolsEvent {psichomics} | R Documentation

## Parses an alternative splicing event from VAST-TOOLS

### Description

Parses an alternative splicing event from VAST-TOOLS

### Usage

    parseVastToolsEvent(event)

### Arguments

`event` | Data.frame: VAST-TOOLS event containing gene symbol, event ID, length, junctions coordinates, event type and inclusion levels for both samples

### Details

Junctions are parsed from

### Value

List with the event attributes (chromosome, strand, event type and the position of the exon boundaries)

### Note

Only supports to parse one event at a time.

### Examples

    event <- read.table(text =
    "NFYA HsaEX0042823 chr6:41046768-41046903 136 chr6:41040823,41046768-41046903,41051785 C2 0 N 0 N"
    )
    psichomics:::parseVastToolsEvent(event)

[Package psichomics version 1.10.2 Index]