normalize_data {proBatch} | R Documentation

## Normalization brings the samples to the same scale

### Description

Normalization brings the samples to the same scale

### Usage

    normalize_data(data_matrix, normalizeFunc = c("quantile",
      "medianCentering"), log_base = NULL)

### Arguments

`data_matrix` | raw data matrix (features in rows and samples in columns)
`normalizeFunc` | global batch normalization method ('quantile' or 'MedianCentering')
`log_base` | whether to log transform data matrix before normalization ('NULL', '2' or '10')

### Value

`data_matrix`-size matrix, with columns normalized

### Examples

    quantile_normalized_matrix <- normalize_data(example_proteome_matrix,
    normalizeFunc = "quantile", log_base = 2)

[Package proBatch version 1.0.0 Index]