example_proteome {proBatch} | R Documentation

## Example protein data in long format

### Description

This is data from Aging study with all iRT, spike-in peptides, few random peptides and QTL proteins for biological signal improvement demonstration

### Usage

    example_proteome

### Format

A data frame with 124655 rows and 5 variables:

peptide_group_label

  peptide ID, which is regular feature level. This column is mostly used as `feature_id_col`

Intensity

  peptide group intensity in given sample. Used in function as `measure_col`

ProteinName

  Protein group ID, specified as N/UniProtID1|UniProtID2|..., where N is number of protein peptide group maps to. If 1/UniProtID, then this is proteotypic peptide

Gene

  conventional gene name of corresponding ProteinName

FullRunName

  name of the file, in most functions used for `sample_id_col`

...

### Source

PRIDE ID will be added in future

[Package proBatch version 1.0.0 Index]