example_sample_annotation {proBatch} | R Documentation

## Sample annotation data version 1

### Description

This is data from BXD aging study with mock instruments to show how instrument-specific functionality works

### Usage

    example_sample_annotation

### Format

A data frame with 233 rows and 11 variables:

FullRunName

  name of the file, in most functions used for `sample_id_col`

MS_batch

  mass-spectrometry batch: 7-level factor of manually annotated batches

EarTag

  mouse ID, i.e. ID of the biological object

Strain

  mouse strain ID - biological covariate #1

Diet

  diet - either `HFD` = 'High Fat Diet' or `CD` = 'Chow Diet'. `Mix` stands for mixture of several samples

Sex

  mice sex - 3-level biological covariate. Possible values - ”

RunDate

  mass-spectrometry running date. In combination with `RunTime` used for running order determination

RunTime

  mass-spectrometry running time. In combination with `RunDate` used for running order determination

DateTime

  numeric date and time generated by `date_to_sample_order`

order

  order of samples generated by sorting DateTime in `date_to_sample_order`

digestion_batch

  peptide digestion batch: 5-level factor of manually annotated batches

...

[Package proBatch version 1.0.0 Index]