330a6f3504ccb3ccde912d59a50074ee *DESCRIPTION
81c66aa8111d8ab9c1426ed9961f3e3b *INDEX
10b224f55413ef9d3ec849750d5c993a *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
967eba2d57ad521ac33be55e15202998 *Meta/hsearch.rds
461e280748a2f995597c8afac8a947f6 *Meta/links.rds
ea5119c767390a4421b5ce480e16bb1b *Meta/nsInfo.rds
db0ff817f1d0626f1de98851015df6a1 *Meta/package.rds
767b41d3ecfb9c577947da6d40356244 *Meta/vignette.rds
ee5e13c6344dd81e1ae6ae2e5c21aaa8 *NAMESPACE
3fdcdc83f41a05d57b850231e2e1ab49 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/pram
d1ba06fae66608dd363f1a3908ddea23 *R/pram.rdb
69e6ee73782f05d02c3c3efec7f661d5 *R/pram.rdx
9e58ad003138d1c66a70d0d10db3d418 *doc/index.html
0369c0ebe341acf07e9ff1254719aebe *doc/pram.R
a4e2076d4e1656856bc8f3c1da25efc5 *doc/pram.Rmd
941396d8c20d6f151165c9a75b29dd29 *doc/pram.pdf
6bc8dfb54b9e62665f41741b2609367c *extdata/bam/CMPRep1.sortedByCoord.clean.bam
3c00bc5d9e5b4e0f16b1f0a1821d63d7 *extdata/bam/CMPRep1.sortedByCoord.clean.chr10.plus.bam
cd18f07d323eec235e4f443244268ec9 *extdata/bam/CMPRep1.sortedByCoord.clean.chr12.minus.bam
ddf08b29acc438c11554daf480bf1699 *extdata/bam/CMPRep1.sortedByCoord.raw.bam
aca49d6b6a2ffd81f81b2f56d0b40e02 *extdata/bam/CMPRep2.sortedByCoord.clean.bam
ab783a9429dbd68054ab1e202589d6f6 *extdata/bam/CMPRep2.sortedByCoord.raw.bam
c72525196731ba5c7a453634e02c245e *extdata/benchmark/plcf.tsv
0dc29665caca31ba0542276d3b7609c0 *extdata/benchmark/tgt.tsv
312a28fd4191383057964266227d6622 *extdata/chromsize/hg19.tsv.gz
0ec9c7b98e125033f6b712211c82e71e *extdata/chromsize/hg38.tsv.gz
7a546ec366f0387ef4d6da49fec1b6d1 *extdata/chromsize/mm10.tsv.gz
bcfe201a8da1b4b4dd7e69d6962d82fc *extdata/chromsize/mm9.tsv.gz
c91b4bd76f65ff4982a7c32187a194de *extdata/demo/SZP.bam
2bff64cd1a98e2a008a3a05aa3fa54e0 *extdata/demo/TLC.bam
c8ff38a72ebd56b20e9b954a12f6800e *extdata/demo/in.gtf
88418451ac78fa3dd45bf4bd49a8f5e5 *extdata/gtf/defIgRanges_in.gtf
162b125396864c90049ee15a5fca22a6 *extdata/gtf/gnc_v24_minus_chr18.gtf
a7cc0cbac78919adb1e6fcb74f8e6ee1 *extdata/gtf/ig_mm10_chr12.gtf
a3b6aa1d02a8bb0f7997d6607c45caf3 *extdata/gtf/selModel_in.gtf
0624089e8191beec85a3ce578e059b08 *extdata/gtf/selModel_out.gtf
e88e53a580084e44f21144a99e466015 *extdata/vignettes/pram.pdf
b97f7004555545b4e69a075419d407b2 *help/AnIndex
a44934917adb85a745c0fddeb1b83222 *help/aliases.rds
c0be4a7c360f6720bbb3daf03ad7e7e3 *help/paths.rds
5182f06d2ac8cb5ee284cf11f3a4187d *help/pram.rdb
ba9928c09375273f61a4eafe8b03936e *help/pram.rdx
155294c7daf757edb9a2693d394a865d *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
08e194fee20ade09b40d8d1fdb9238d8 *html/buildModel.html
0b95ce5ff6f19fd5578537ca8ef47032 *html/defIgRanges.html
fdd4d67b58fb4ee3698f5e5aecf57cf8 *html/evalModel.html
6da1903887158eabfcbac74a8ee0e32c *html/prepIgBam.html
7f44204ae988a50e38a77b61d4a868c8 *html/runPRAM.html
8e8c7a0e6889a63e381eb3ed6055da4a *html/selModel.html
