setGenome {pipeFrame} | R Documentation

## Configure genome for all steps

### Description

Configure the reference genome assembly for all steps.

### Usage

    getValidGenome()

    setGenome(genome)

    getGenome()

### Arguments

`genome` | `Character` scalar. Valid genome to be configured.

### Value

`getValidGenome` | `Character` scalar. All valid genome assemblies for this package.
`setGenome` | All packages and dependencies are configured and installed. No value will be returned.
`getGenome` | `Character` scalar. Display the configured genome.

### Examples

    getValidGenome()
    setGenome("hg19")
    getGenome()

[Package pipeFrame version 1.0.0 Index]