7b1b591b6d5eead61cd974aa4338091d *CITATION
ccac507928bb6fc70898ff014ec95442 *DESCRIPTION
8ef0f5d033322811a261a693b5572a3f *INDEX
f69a15a7198cd5e61a15d66fc7823205 *Meta/Rd.rds
9aacb18b4907b7530843638d52dc5a1b *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
fec9eb2efe937b1c1082f01bd79bc710 *Meta/hsearch.rds
493319bf404d89439d26d737f93b82c9 *Meta/links.rds
6999565b6ba6d9d55cd749f0917112b4 *Meta/nsInfo.rds
d20acdb56e1eb7e2fad0bdccf8e0f6f3 *Meta/package.rds
a96a46037fc15cc8b18b580f0d2ae316 *Meta/vignette.rds
46d2b500d0d5db61937c613a56c783d8 *NAMESPACE
3c5c2ab784504071c575dab2a480986f *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/phyloseq
7301307b6dbc5c8669238380614d9a20 *R/phyloseq.rdb
8892834b8b833a50f3797b62440684ee *R/phyloseq.rdx
a1b5a96dcdc95526a18bd401efd336ee *data/GlobalPatterns.RData
038083f845e5ae76c5b3436b2d351bc3 *data/datalist
b3c059b521a35f410a18ae48a6770c83 *data/enterotype.RData
33da91bd0b922abd1b723f7faee4c213 *data/esophagus.RData
7d2073929d41fe524e688b12ac71ccdd *data/soilrep.RData
21b65af98206415066c3aa27e529b51f *doc/Unweighted_UniFrac.RData
5674215b9018a1ffebb87948a1b638b5 *doc/index.html
bd26069a0de05c6966ee7e73e01b4210 *doc/phyloseq-FAQ.R
cf5fea717fd5668caccfbe23e01ac55a *doc/phyloseq-FAQ.Rmd
3632e17fbea5c5baab11ff09b7afb06a *doc/phyloseq-FAQ.html
b06a071de80ae0979e46f42613bea4e6 *doc/phyloseq-analysis.R
74cb84a93009aa7e044a727274730851 *doc/phyloseq-analysis.Rmd
84a64196b5586eac3dd3dac2d5db2df1 *doc/phyloseq-analysis.html
e79f5cfad480a4b8a5292bf79ebb89da *doc/phyloseq-basics.R
88070ea9e798004d33b1b2525e338aa7 *doc/phyloseq-basics.Rmd
cc2c962ac2164fa489e40827b624b714 *doc/phyloseq-basics.html
61a321dc0c19ae915fcb5f8bbc23354d *doc/phyloseq-mixture-models.R
b7ed25e5125d958f49c74c4a5e9b18bc *doc/phyloseq-mixture-models.Rmd
691add29577d03078fd27fe74bcb0fed *doc/phyloseq-mixture-models.html
245083ef394214a74bef79538bf49713 *extdata/GP_otu_table_rand_short.txt.gz
f6a656aa33dbaf78c5c33f95fbce5dce *extdata/GP_tree_rand_short.newick.gz
f333e7635fdb5f8b7791aa2bc210c03d *extdata/biom-refseq.fasta
2d7db0dc7ca5af5679cb01c89b276857 *extdata/biom-tree.phy
cc2cc495203a3867f735e15746dc7e61 *extdata/esophagus.fn.list.gz
e3d29f782e403b244001c76aa31a860d *extdata/esophagus.fn.shared.gz
490941471f99ee780bc9ca0375c28547 *extdata/esophagus.good.groups.gz
c8e6583fbf8e73275adae29486dbd2b9 *extdata/esophagus.tree.gz
aa94c8a39922d06b405b30dee5a3c8e2 *extdata/gg13-5-73.tree.gz
98cc85b57df47f05b89382039851855e *extdata/gp500-pycogent.py
23bff1b9e88c8a4387dbe4e54d1577a3 *extdata/gp500-uuf.csv
9da1d4d110b6f502edd10691fbf16a07 *extdata/gp500-wuf.csv
202327b96a610f7dc5db497db6fc0585 *extdata/gp500-wufu.csv
384aeb5ee9b6fb67ade0fb92f11288c8 *extdata/gp500test.env.txt
2f4ba70867e75cce2795ada4bbbefddf *extdata/gp500test.tree
b3f62e825f67430835988e96dd795cb7 *extdata/master_map.txt
49399f7c1477d4e7fb6382450a7144f1 *extdata/min_dense_otu_table.biom
c6accec54fcb6fbc0d7bb79a0a2a9413 *extdata/min_sparse_otu_table.biom
ff15e071e19186b6d6c450cdf783dee0 *extdata/mothur_example.cons.taxonomy.gz
0fabc9a5c3218713b29195f049048db8 *extdata/qiime500-refseq.fasta
7bdd55835e55a1022b66595d5904db7c *extdata/rformat_dist_0.03.txt.gz
3a87d75c981945acbdefab24c556afdf *extdata/rich_dense_otu_table.biom
e0d1194d2d94ea81994c93b8f0db7f51 *extdata/rich_sparse_otu_table.biom
5564e2af60ef2b5e44582a7cb5532d14 *extdata/study_1457_split_library_seqs_and_mapping.zip
c1c3eee391f4d5d9ab89831a06fe2855 *extdata/study_816_split_library_seqs_and_mapping.tar.gz
01394a465cd6aae33f8a81a71ab61efe *extdata/study_816_split_library_seqs_and_mapping.zip
b3f62e825f67430835988e96dd795cb7 *extdata/study_gp.txt
40af55c33ee8200c3b4922c53a7f4269 *extdata/usearch.uc
4a6c66094f6be14759fdcc95f5db99c5 *help/AnIndex
ea8758fbae340af63655a60662cba4b8 *help/aliases.rds
32cc80ba5d68e0bdca02ac5918b9c309 *help/paths.rds
104cf4b80ab76823ab611b0f9da4b350 *help/phyloseq.rdb
5626fecd157f94dfd34a3322bb25a065 *help/phyloseq.rdx
9285ed6e2c60bb6cd24bbef6bf858602 *html/00Index.html
e87203138605c616b9954933fc16a14e *html/DPCoA.html
f0969498df632ccb835aa82c3cce5609 *html/JSD.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
d26082238f91344f52973ba9472be2f0 *html/UniFrac-methods.html
7ad490ab51c0f81dee6c51ebf021a612 *html/access.html
e24eb37564041bd9b9fc2e5396d17923 *html/assign-otu_table.html
6e3d4a07f9d2bf5a7711871af2f9f4d2 *html/assign-phy_tree.html
45c7758ab8a9abd0db4bc6ec6fed93bc *html/assign-sample_data.html
562f00c2b2a4b3cf95f613d91a7d0bbb *html/assign-sample_names.html
5f17a884381e270c2d7a002e40df2700 *html/assign-tax_table.html
a8e81985c767536868ee81c5c779bf06 *html/assign-taxa_are_rows.html
7e2ea64b23e1e27e7f7a8404795b6f34 *html/assign-taxa_names.html
4a3ec7246d393a29c7809a8c07c25619 *html/build_tax_table.html
cba1c9e9f893171a767ae54da7e39bc7 *html/capscale-phyloseq-methods.html
450cf9c8758f6a312a1414b4339e7377 *html/cca-rda-phyloseq-methods.html
950389a43f24a9d94d9c23ba86ce1ea8 *html/chunkReOrder.html
8c9933e7e4cc6e1e4994d7f507623964 *html/data-GlobalPatterns.html
4ce74ec098e031e2f32bc5393c0794e5 *html/data-enterotype.html
62f7214b0f875be1c48570af00b6e2fb *html/data-esophagus.html
fa04137b52b582323d8bfe3df83d1815 *html/data-soilrep.html
b7d8bd53c94571ce502a038c471b7452 *html/decorana.html
91cb5aa34ad90e6939ba063f0d017697 *html/dist-class.html
d8bdd1002c622f297c6d664a80658d18 *html/distance.html
92aa5db7fc9c02cc3e1ffd3375e073ee *html/distanceMethodList.html
f8d5b77d56d66e208a52671b3aaef251 *html/envHash2otu_table.html
c8cb91ab52783ea15dad52bf82a06922 *html/estimate_richness.html
6b0f30878dcb8187bcf8271dccb44a0d *html/export_env_file.html
2a1ab37a619cc2926ba5ddddff9771e0 *html/export_mothur_dist.html
acd005a337330491ac1d1fc8fdbbe4ce *html/extract-methods.html
9d713b93ea39cbc6bc87922962a90c0c *html/filter_taxa.html
00c7db1e7ec6dc7f35730a0f305659c5 *html/filterfun_sample.html
be33a18b50fecd16b2b9eb209f109893 *html/fix_phylo.html
48c7fc75d2835dd84ae8889829b32981 *html/gapstat_ord.html
c40df3511589e95e6fe1c8e95fae2491 *html/genefilter_sample-methods.html
cabea3c7885c2a5b5df13331c68eb657 *html/get.component.classes.html
070a5e92cb183a584efdb7ccdb012813 *html/get_sample-methods.html
a5cc9958d59a6d14e3b813e5e96c55af *html/get_taxa-methods.html
f633d76264008bd97a52691bf635b7f2 *html/get_taxa_unique.html
043cb96c2f07bf54f7fe073d6466b505 *html/get_variable.html
8dd2bc58aadd2759ec3378c02e9116f1 *html/getslots.phyloseq.html
f74d69f819651e2d6e020d1afc471278 *html/import.html
d0e72e4bf0f6a29905232a06eb709cb7 *html/import_RDP_cluster.html
7e1a48c338fa1b1d27bcbeb779838c73 *html/import_RDP_otu.html
8c5ce00912ca1ac4fcbc0ec74f8742fc *html/import_biom.html
ecb67c5c19dfd22ff8c3e8fc629d6e20 *html/import_env_file.html
1ddc8d6876fdcbda9148d69fa86a8bcb *html/import_mothur.html
44156acbf7e38a1159f4370a830b8e61 *html/import_mothur_constaxonomy.html
bc31f5328811ab7c4a5e055ae7b5ef74 *html/import_mothur_dist.html
f31dd2774350274e105fbfac0775ea3a *html/import_mothur_groups.html
df1828cfa3ad8d4370bab80d52642fa4 *html/import_mothur_otu_table.html
292c7ba6cbbfe2238e213c63e806e4e6 *html/import_mothur_otulist.html
4ceebbc87b2fa0032295fb54ebf4fa3c *html/import_mothur_shared.html
81bf8add2dfc252a8ba33a626a5c2e30 *html/import_pyrotagger_tab.html
ffb0bcf7d8948ff1ee9c0de8b806bece *html/import_qiime.html
117b9120e52ba99d0ae2512ea97bac85 *html/import_qiime_otu_tax.html
55e492d684dd24e98267773d7ebd9f9c *html/import_qiime_sample_data.html
a052e4ea109fe3b17fac9030e350721a *html/import_uparse.html
49f22b5de48b97a8bbd6409bca2b753a *html/import_usearch_uc.html
582c8da3d8cbd114296760435592e5a2 *html/index_reorder.html
b82cce82f014989a6ef35ea70a4ed5d1 *html/intersect_taxa.html
da109dab08eba9f4161919e3f554379e *html/make_network.html
5256aef52812ab4a72975e7daa4c18d8 *html/merge_phyloseq.html
60c3b6ceaa843628596d625a27d249c0 *html/merge_phyloseq_pair-methods.html
2b25ac4ec460f3f957ebab1a3b510f29 *html/merge_samples-methods.html
aae1e96b1f0a831de54117869e64015f *html/merge_taxa-methods.html
8f4a757474e906ffc32af5877c018676 *html/metaMDS.html
36c9a930019af29c4a68b8c5e2df93fe *html/microbio_me_qiime.html
a5f79b7074186a6460e6bd31cbdda5b7 *html/mt-methods.html
0c5ce6ed113e78c5721dd54a9af9df47 *html/nodeplotblank.html
a91b01cabe5d83d76e177837d5d00e08 *html/nodeplotboot.html
979fdedec78dde46bc0ef4a60b789ff9 *html/nodeplotdefault.html
3ab4928cd4a910af2ee9001adbdfb962 *html/nsamples-methods.html
662ea6bfe6d907d7453b695416c5a2c5 *html/ntaxa-methods.html
25fcb0185f8c5181685de78f245e4e43 *html/ordinate.html
543a3e12557bb62e8cb2d2aa064807ba *html/otu_table-class.html
fa7cdede687116a3e7ef769c30e51eb2 *html/otu_table-methods.html
5e2a06b276c4d0fbcf53efbca14be346 *html/parseTaxonomy-functions.html
c3de6892441756f4140b774cd3ed6143 *html/pcoa.html
e609b1004beb158ccdf83dfaf1d1fa02 *html/phy_tree-methods.html
06d9b5df8d0a8ad41c4d10d85606d673 *html/phylo-class.html
606128dccb09518a4bd6be3765e6500e *html/phylo.html
d566d1b1badc975707ada4e7cf351f4a *html/phyloseq-class.html
501c0b701dda9be41c28305a96f100f2 *html/phyloseq-deprecated.html
833b7ddb910b97861e8ff2d059da54ce *html/phyloseq-package.html
5a4808c5fc5c4a5b2ea552af5a37c56d *html/phyloseq.html
f2b8defa7641fc03f72924392a274c13 *html/phyloseq_to_deseq2.html
41f7d06a43e3a2f876612cae2910d6f0 *html/phyloseq_to_metagenomeSeq.html
9190cdd1d3a396046b60db59ce18bde0 *html/plot_bar.html
8325f50c0cb8dd5e842a0202185445ad *html/plot_clusgap.html
26361fe9143c6d21c4da117cd03c6c3b *html/plot_heatmap.html
aa390152a64ada3fb8c8b2be46a8bf55 *html/plot_net.html
78b21d7305e1b9cbe34ea774d9fb79af *html/plot_network.html
d6c25116856a6e6904e2b6dd38150a6f *html/plot_ordination.html
db7e79e3e6b16eff7e3df500160c4072 *html/plot_phyloseq-methods.html
c20f9b2aa1900f818422fe80c6e6bbb1 *html/plot_richness.html
f754a41ed1b1aec65321a0b602f49589 *html/plot_scree.html
f4d686e1f98f67cf1618c87153b19273 *html/plot_tree.html
52e680ef68c427a88ab76c5b9a328603 *html/prune_samples-methods.html
db2e18cfa8f8d9e8e046370eea5044da *html/prune_taxa-methods.html
2b246db5abb27f927bc2e0529baac482 *html/psmelt.html
a185531349aeb3416ace7e6b81825084 *html/rank_names.html
ec1329a93577e2912f5e737106073215 *html/rarefy_even_depth.html
344b6bf600ceafb3051411b7d2623053 *html/read_tree.html
a89c047307d486d510a8160e5140ef85 *html/read_tree_greengenes.html
3f561e5bad8136dc15b7795ea076197a *html/reconcile_categories.html
d731b8bc2d140235085a1cb42b5b1fa5 *html/refseq-methods.html
d4d206839a5225096c43d9c96fe5af96 *html/rm_outlierf.html
53ea26fbe632c95b80e671fab905b27b *html/sample_data-class.html
bfdbb7704db1fd1d5f5ca08948cc1457 *html/sample_data-methods.html
13ffaa8f542cc285bf8ecbfd35f66a16 *html/sample_names-methods.html
a5d86fb018d9608c0e83996fbbe61245 *html/sample_sums.html
8929fee03f0c242637bb5f231b852ada *html/sample_variables.html
5b22e7d1e6ef5e0781c9d0e726a6099b *html/show-methods.html
ce1b5c241b3525043cfe6c3c05031536 *html/show_mothur_cutoffs.html
2dbd3dd8a70dba11bb79e30d43c61d88 *html/splat.phyloseq.objects.html
21dec6ed8cfc2888cb519b310ab9ac4f *html/subset_ord_plot.html
f52768c01bfe19750b53244bbfd07390 *html/subset_samples-methods.html
a4e032064d912e869111e9687a3870d4 *html/subset_taxa-methods.html
be847d1c87e363a6bc11958954f3ef9f *html/tax_glom.html
68295418bd8d2a3ea77bd3e7f2dce66f *html/tax_table-methods.html
5539f24bde32e2573fd719af76648e6a *html/taxa_are_rows-methods.html
9415c015eb528a320b60aa4428d4f1cf *html/taxa_names-methods.html
333d06d097b7a8a59c192404aadc5d9a *html/taxa_sums.html
7aa8f23a2cfe6c7ae03e757f7ba3eec4 *html/taxonomyTable-class.html
6491d13a00a83e9bbb5fba941166dd66 *html/threshrank.html
e2a0ecc81f01e034c1e2cb37457a2f2a *html/threshrankfun.html
4ab754bdc72393923f231e645696c88a *html/tip_glom.html
ec3f3d92efa3a9368b52334ff77a838b *html/topf.html
bdc3b9326b5c70070c65d4a4ea2514b9 *html/topk.html
98d4d88343473b0c2c48264dcef52428 *html/topp.html
2e08aacf8a4fb1da6e45f56da686b943 *html/transformcounts.html
f0586fd6131cfbb1f2e8376e0e67303e *html/transpose-methods.html
20bf465d8e4e37e9b934eb43e9a6d95a *html/tree_layout.html
9d42770074d3908bf54676d25953f94a *scripts/installer.R
