import_env_file {phyloseq} | R Documentation

## Read a UniFrac-formatted ENV file.

### Description

Convenience wrapper function to read the environment-file, as formatted for input to the UniFrac server (http://bmf2.colorado.edu/unifrac/). The official format of these files is that each row specifies (in order) the sequence name, source sample, and (optionally) the number of times the sequence was observed.

### Usage

    import_env_file(envfilename, tree=NULL, sep="\t", ...)

### Arguments

`envfilename` | (Required). A charater string of the ENV filename (relative or absolute)
`tree` | (Optional). `phylo-class` object to be paired with the output otu_table.
`sep` | A character string indicating the delimiter used in the file. The default is `"\t"`.
`...` | Additional parameters passed on to `read.table`.

### Value

An `otu_table-class`, or `phyloseq-class` if a `phylo-class` argument is provided to `tree`.

### References

http://bmf2.colorado.edu/unifrac/

### See Also

`import`

`tip_glom`

### Examples

    # import_env_file(myEnvFile, myTree)

[Package phyloseq version 1.28.0 Index]