plot_phyloseq {phyloseq} | R Documentation

## Generic plot defaults for phyloseq.

### Description

There are many useful examples of phyloseq graphics functions in the phyloseq online tutorials. The specific plot type is chosen according to available non-empty slots. This is mainly for syntactic convenience and quick-plotting. See links below for some examples of available graphics tools available in the `phyloseq-package`.

### Usage

    plot_phyloseq(physeq, ...)

    ## S4 method for signature 'phyloseq'
    plot_phyloseq(physeq, ...)

### Arguments

`physeq` | (Required). `phyloseq-class`. The actual plot type depends on the available (non-empty) component data types contained within.
`...` | (Optional). Additional parameters to be passed on to the respective specific plotting function. See below for different plotting functions that might be called by this generic plotting wrapper.

### Value

A plot is created. The nature and class of the plot depends on the `physeq` argument, specifically, which component data classes are present.

### See Also

phyloseq frontpage tutorials.

`plot_ordination` `plot_heatmap` `plot_tree` `plot_network` `plot_bar` `plot_richness`

### Examples

    data(esophagus)
    plot_phyloseq(esophagus)

[Package phyloseq version 1.28.0 Index]