show_mothur_cutoffs {phyloseq} | R Documentation

## Show cutoff values available in a mothur file.

### Description

This is a helper function to report back to the user the different cutoff values available in a given mothur file – for instance, a list or shared file.

### Usage

    show_mothur_cutoffs(mothur_list_file)

### Arguments

`mothur_list_file` | The file name and/or location as produced by mothur.

### Value

A character vector of the different cutoff values contained in the file. For a given set of arguments to the `cluster()` command from within mothur, a number of OTU-clustering results are returned in the same file. The exact cutoff values used by mothur can vary depending on the input data/parameters. This simple function returns the cutoffs that were actually included in the mothur output. This an important extra step prior to importing data with the `import_mothur` function.

### See Also

`import_mothur`

[Package phyloseq version 1.28.0 Index]