distanceMethodList {phyloseq} | R Documentation

## List of distance method keys supported in `distance`

### Description

Distance methods should be specified by exact string match. Cannot do partial matching for all options, because too many similar options in downstream method dispatch.

### Usage

    distanceMethodList

### Format

A list of character vectors. Every entry specifies a supported distance method. Names in the list indicate which downstream function is being utilized for further details. Same functions are linked in the itemized list below.

`unifrac`

  `UniFrac`

`wunifrac`

  `UniFrac`

`dpcoa`

  `DPCoA`

`jsd`

  `JSD`

`manhattan`

  `vegdist`

`euclidean`

  `vegdist`

`canberra`

  `vegdist`

`bray`

  `vegdist`

`kulczynski`

  `vegdist`

`jaccard`

  `vegdist`

`gower`

  `vegdist`

`altGower`

  `vegdist`

`morisita`

  `vegdist`

`horn`

  `vegdist`

`mountford`

  `vegdist`

`raup`

  `vegdist`

`binomial`

  `vegdist`

`chao`

  `vegdist`

`cao`

  `vegdist`

`w`

  `betadiver`

`-`

  `betadiver`

`c`

  `betadiver`

`wb`

  `betadiver`

`r`

  `betadiver`

`I`

  `betadiver`

`e`

  `betadiver`

`t`

  `betadiver`

`me`

  `betadiver`

`j`

  `betadiver`

`sor`

  `betadiver`

`m`

  `betadiver`

`-`

  `betadiver`

`co`

  `betadiver`

`cc`

  `betadiver`

`g`

  `betadiver`

`-`

  `betadiver`

`l`

  `betadiver`

`hk`

  `betadiver`

`rlb`

  `betadiver`

`sim`

  `betadiver`

`gl`

  `betadiver`

`z`

  `betadiver`

`maximum`

  `dist`

`binary`

  `dist`

`minkowski`

  `dist`

`ANY`

  `designdist`

### See Also

`distance`

### Examples

    distanceMethodList

[Package phyloseq version 1.28.0 Index]