phyloseq_to_metagenomeSeq {phyloseq} | R Documentation

## Convert phyloseq data to MetagenomeSeq MRexperiment object

### Description

No testing is performed by this function. The phyloseq data is converted to the relevant `MRexperiment-class` object, which can then be tested in the zero-inflated mixture model framework (e.g. `fitZig`) in the metagenomeSeq package. See the phyloseq-extensions tutorials for more details.

### Usage

    phyloseq_to_metagenomeSeq(physeq, ...)

### Arguments

`physeq` | (Required). `phyloseq-class`.
`...` | (Optional). Additional named arguments passed to `newMRexperiment`. Most users will not need to pass any additional arguments here.

### Value

A `MRexperiment-class` object.

### See Also

`fitTimeSeries` `fitLogNormal` `fitZig` `MRtable` `MRfulltable`

### Examples

     # Check out the vignette metagenomeSeq for more details.
     # vignette("metagenomeSeq")
     data(soilrep)
     phyloseq_to_metagenomeSeq(soilrep)

[Package phyloseq version 1.28.0 Index]