5d1480a1ed87589765e31fc39bdc60d2 *CITATION
d3026cd6e089db49db40900ae091aebd *DESCRIPTION
5aa322d25948c7a1f01eef0bb55f0822 *INDEX
68710e37dccd5edbb6cb31236fbc405b *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
47c2d09f5a02f61db520503af346f02f *Meta/hsearch.rds
62c9daf2d83e6bf5f177a0872b27f492 *Meta/links.rds
a984aa6f68ca9f17e93b71a82a369613 *Meta/nsInfo.rds
ea2042de9a095f970c4850aa2f1c7183 *Meta/package.rds
e43850b2b76d5542ee7f76716e1dad73 *Meta/vignette.rds
3723122c751a12180441c5026118876a *NAMESPACE
ad2526eb4d4bcabb6fc4b978e146d97a *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/paxtoolsr
408fb254d75278eb7c51b025afd22cd4 *R/paxtoolsr.rdb
fc9556e7de227d4e4dcc903eab98a000 *R/paxtoolsr.rdx
6d04e35e1764075bf908f2d025c220e4 *doc/index.html
925ed8fdd8b886f23a2cb43031504e6b *doc/using_paxtoolsr.R
c4d03ddea5f82fff3813233d12ec9070 *doc/using_paxtoolsr.Rmd
9bce04ff345c71c45ba31a885add952c *doc/using_paxtoolsr.html
57094ba294cbb6fd68b5e557da2bad9b *extdata/10523676-compact.xml
54ab0ba22a9a4c822d8e575990c07331 *extdata/REACT_12034-3.owl
befab228b4b455dad710c9e1580e3fb1 *extdata/biopax3-short-metabolic-pathway.owl
2b5dfeb2ea9bfec99bd6dc4aba646b89 *extdata/dna_replication.owl
0023a3039a2f2658bb8c7885077cbbd5 *extdata/pathways.txt.gz
5a160fa41a75c7c756c2f727535d9d08 *extdata/raf_map_kinase_cascade_reactome.owl
d9802077f40d32d53da69dbbc116d215 *extdata/sif_color_code.txt
7ee52a8e1359ac99e0638777b1e0039e *extdata/tca_cycle.sif
befab228b4b455dad710c9e1580e3fb1 *extdata/test_biopax.owl
360e4ae65db08fb3a419806d3947666b *extdata/test_edgelist.txt
720f4a025c3d8906980885ca1ab33f8b *extdata/test_gsea.gmt
c93c59f7bd8a7d4aafcee2da89ace6f5 *extdata/test_gsea_1.gmt
01d9c9d6de8696250b58d6181392250e *extdata/test_sbgn.xml
7ee52a8e1359ac99e0638777b1e0039e *extdata/test_sif.txt
55bd7efeea626b96b3f332fc3e58d89f *extdata/test_sif_shortestPath.txt
a91fd992f44498a410ba6fb4af7496d0 *extdata/test_sifnx.txt
d4a9f3016f63dd1bddb9cce026810563 *extdata/test_sifnx2.txt
3e2b04768807dcec38b24914ebe7640c *extdata/test_sifnx_250.txt
42d032414c1a6fdeea0fb9e1719d6b6f *extdata/test_sifnx_sm.txt
4f122bc4d29b457e781ab7beaef257b7 *help/AnIndex
c4881026af63c854f4e83e291535731d *help/aliases.rds
9c21cb52969e1f80845d41744e34d260 *help/paths.rds
d521b4a9cee70f6bce279ff2d7be6bb5 *help/paxtoolsr.rdb
f48794122d0e5bf7a763b14749790f74 *help/paxtoolsr.rdx
9ef861bd48ecb8f2a4b3ac1f088c239d *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c9f892a0cf33c0cb2cacaae090f15df3 *html/addAttributeList.html
943b817438fcf3aabb3f9bdd955234c2 *html/convertDataFrameListsToVectors.html
80a87c6bb3456a5a487ffd3f384db64f *html/convertIds.html
26551991eeba98a529e408a778917452 *html/convertSifToGmt.html
5e9332a426b6498da62d1b1b8c9628c1 *html/downloadFile.html
2d8e23c0c56c25fad777df52d7bac9fa *html/downloadPc2.html
2930cd3e29158fa2087d2297c3f15273 *html/downloadSignedPC.html
c7fce12526802cd45afe155af66c9ad3 *html/fetch.html
84fe16bd5922509a51b034411a7a58ad *html/filterSif.html
999ccaed104bb9b1146bd51f0b483a87 *html/getCacheFiles.html
bc1440f7319b08564adad6cc9d141f63 *html/getErrorMessage.html
2d9867e3040cb850c9ad34f692fd3f7f *html/getNeighbors.html
cfe766ec12fe618961be8abb9c913b4a *html/getPc.html
e839eb453303bd840433e48abe343032 *html/getPcDatabaseNames.html
3a42dd4d68f05a2ba3a4fd37079b5503 *html/getPcUrl.html
addc85afb8047848d9ef611f5d2c628b *html/getShortestPathSif.html
c56bf568bdd2fc4c4eb338d9d87039f0 *html/getSifInteractionCategories.html
ef5fb2f9132852da1111ab3bd3ceaaad *html/graphPc.html
26579b1ba6ae91471bff862f3d554666 *html/integrateBiopax.html
c9756806309520030c6c100ddb7969b0 *html/loadSifInIgraph.html
41d37f90336fcb0766f6d6400cb8cc7a *html/mapAttributes.html
f33a26c15d990d0dc3e3a0f786a5b1f3 *html/mapValues.html
fc0a0f08009c15fafdd397fd30060ba5 *html/mergeBiopax.html
132c5fc4d6eb0f97af550a77cb91453e *html/pcDirections.html
2a02f474ac1a3cb5bdea51bfe91e1c1b *html/pcFormats.html
73f46484c88f37b92dbe16b4df7d8110 *html/pcGraphQueries.html
81aae58380ef1c46c323fc125492e992 *html/processPcRequest.html
d60ba794b06bf7318bd0b0e610fc1306 *html/readBiopax.html
dd2e961ce8c5490919b7df9848d77de2 *html/readGmt.html
df3bd860025b4c289e00cbf00d965061 *html/readPcPathwaysInfo.html
3e2ebb8962764641ee70301b0d111e58 *html/readSbgn.html
0202d3446a372e9e9d7db635fc9d5e8f *html/readSif.html
7bae99cf17c9205944b596b0aaef710f *html/readSifnx.html
1a4c99bce46f5e62e56749f436d67221 *html/searchListOfVectors.html
f453a96f7e832254f7f808c99dad8e91 *html/searchPc.html
aec0ade86d7b2bfa049f450bf00cf9ef *html/splitSifnxByPathway.html
5f98a11d4a6352aceb91c4b838c04adc *html/summarize.html
b3b5085fb53aa95e515b2c8af7e6ba74 *html/summarizeSif.html
95d0ddefd82a7e4c27f19c5ce3cb3527 *html/toCytoscape.html
1b925e475a8fb345a7a078c6e846bd85 *html/toGSEA.html
55c782f179188087ae6abc262fae003a *html/toLevel3.html
7e4666f74363d3a1b96e07deeb70fe71 *html/toSBGN.html
5a3dea0921f989ded8b0c00e146f6399 *html/toSif.html
6a9846e09da0fb14862e43576ab7aeda *html/toSifnx.html
52f97bd9392c523f0898e91c83db07d9 *html/topPathways.html
b642f0bde03f6e77a25927d55a515ef6 *html/traverse.html
002f53ff7a0ff316aa337c97d2c61b84 *html/validate.html
10b770f4bf107c3605328e762b505f57 *ignore/convertSifnxIds.R
ed2e681553db936079aa21796b1d0a89 *ignore/convertToDF.R
daaee6df65df384e7168e8c0577eceb5 *ignore/convertToDT.R
fb5b7f7caef5743309a18afbc9b3a2ad *ignore/convertToDataFrameWithListOfVectors.R
33ea73ea94104e9e72ec060d2470d216 *ignore/del.txt
11a9c3f3e62bbb6f2385c98b78e3b469 *ignore/extractIds.R
0477d290cc88cb8983762f205f7f9ee0 *ignore/readSifnxSmall.R
7b853239982cd3f311b6bbb57e4fd28e *java/paxtools-4.3.1.jar
32810134c877218a48464ea8a46488eb *paxtoolsNotes.txt
