readPcPathwaysInfo {paxtoolsr} | R Documentation

## Read in Pathway Commons Pathways Information

### Description

Read in Pathway Commons Pathways Information

### Usage

    readPcPathwaysInfo(inputFile = NULL, version = NULL)

### Arguments

`inputFile` | an inputFile; if NULL then retrieve the current pathways.txt; see details (default: NULL)
`version` | a version number for a previous version of Pathway Commons data; versions 3 and above. Parameter set as version="8". Available versions "http://www.pathwaycommons.org/archives/PC2/"

### Details

This file is generally found as pathways.txt.gz (e.g. http://www.pathwaycommons.org/archives/PC2/current/pathways.txt.gz)

### Value

a data.frame

### Examples

    file <- system.file("extdata", "pathways.txt.gz", package="paxtoolsr")
    results <- readPcPathwaysInfo(file, version="8")

[Package paxtoolsr version 1.18.0 Index]