check_cvg_constraints {openPrimeR} | R Documentation

## Evaluation of Coverage Constraints.

### Description

Computes the biochemical properties specified in the `settings` object and determines whether the primers fulfill the required constraints.

### Usage

    check_cvg_constraints(primer.df, template.df, settings,
      active.constraints = names(cvg_constraints(settings)),
      to.compute.constraints = active.constraints, for.shiny = FALSE,
      updateProgress = NULL)

### Arguments

`primer.df` | A `Primers` object containing the primers to be checked.
`template.df` | A `Templates` object containing the template sequences corresponding to the primers.
`settings` | A `DesignSettings` object containing the coverage constraints to be checked and their settings.
`active.constraints` | Identifiers of constraints that are to be checked.
`to.compute.constraints` | Constraints that are to be computed.
`for.shiny` | Whether to format output for HTML.
`updateProgress` | Progress callback function for shiny.

### Value

A `Primers` object with with columns for each constraint in `active.constraints`.

### Note

Please note that some constraints can only be computed if additional software is installed, please see `DesignSettings` for an overview.

[Package openPrimeR version 1.6.0 Index]