gtMethod-class {openCyto} | R Documentation

## A class to represent a gating method.

### Description

A gating method object contains the specifics for generating the gates.

### Slots

name

  a `character` specifying the name of the gating method

dims

  a `character` vector specifying the dimensions (channels or markers) of the gate

args

  a `list` specifying the arguments passed to gating function

groupBy

  a `character` or `integer` specifying how to group the data. If `character`, group the data by the study variables (columns in `pData`). If `integer`, group the data by every `N` samples.

collapse

  a `logical` specifying wether to collapse the data within group before gating. it is only valid when `groupBy` is specified

### Examples

     ## Not run:
         gt <- gatingTemplate(system.file("extdata/gating_template/tcell.csv",package = "openCyto"))
         getGate(gt, '2', '3')

    ## End(Not run)

[Package openCyto version 1.22.2 Index]