# Network smoothing for scRNAseq

## Documentation for package ‘netSmooth’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

human.ppi | Human Protein-Protein interaction graph
mouse.ppi | Mouse Protein-Protein interaction graph
netSmooth | Perform network smoothing of gene expression or other omics data
netSmooth-method | Perform network smoothing of gene expression or other omics data
pickDimReduction | Pick the dimensionality reduction method for a dataset that gives the 2D embedding with the highest entropy
pickDimReduction-method | Pick the dimensionality reduction method for a dataset that gives the 2D embedding with the highest entropy
robustClusters | Perform robust clustering on dataset, and calculate the proportion of samples in robust clusters
robustClusters-method | Perform robust clustering on dataset, and calculate the proportion of samples in robust clusters
smallPPI | A small human Protein-Protein interaction graph for use in examples.
smallscRNAseq | A small single cell RNA-seq dataset for use in examples.