plot_rho_delta {monocle} | R Documentation

## Plots the decision map of density clusters .

### Description

Plots the decision map of density clusters .

### Usage

    plot_rho_delta(cds, rho_threshold = NULL, delta_threshold = NULL)

### Arguments

`cds` | CellDataSet for the experiment after running clusterCells_Density_Peak
`rho_threshold` | The threshold of local density (rho) used to select the density peaks for plotting
`delta_threshold` | The threshold of local distance (delta) used to select the density peaks for plotting

### Examples

    ## Not run:
    library(HSMMSingleCell)
    HSMM <- load_HSMM()
    plot_rho_delta(HSMM)

    ## End(Not run)

[Package monocle version 2.12.0 Index]