extract_good_branched_ordering {monocle} | R Documentation

## Extract a linear ordering of cells from a PQ tree

### Description

Extract a linear ordering of cells from a PQ tree

### Usage

    extract_good_branched_ordering(orig_pq_tree, curr_node, dist_matrix,
      num_branches, reverse_main_path = FALSE)

### Arguments

`orig_pq_tree` | The PQ object to use for ordering
`curr_node` | The node in the PQ tree to use as the start of ordering
`dist_matrix` | A symmetric matrix containing pairwise distances between cells
`num_branches` | The number of outcomes allowed in the trajectory.
`reverse_main_path` | Whether to reverse the direction of the trajectory

[Package monocle version 2.12.0 Index]