cellPairwiseDistances {monocle} | R Documentation

## Get the matrix of pairwise distances between cells

### Description

Retrieves a matrix capturing distances between each cell used during cell ordering.

### Usage

    cellPairwiseDistances(cds)

### Arguments

`cds` | expression data matrix for an experiment

### Value

A square, symmetric matrix containing the distances between each cell in the reduced-dimensionality space.

### Examples

    ## Not run:
    D <- cellPairwiseDistances(HSMM)

    ## End(Not run)

[Package monocle version 2.12.0 Index]