| module_Validate {miRSM} | R Documentation |
Validation of miRNA sponge interactions in each miRNA sponge module
module_Validate(Modulelist, Groundtruth)
Modulelist |
List object: a list of the identified miRNA sponge modules. |
Groundtruth |
Matrix object: a list of experimentally validated miRNA sponge interactions. |
List object: a list of validated miRNA sponge interactions in each miRNA sponge module
Junpeng Zhang (https://www.researchgate.net/profile/Junpeng_Zhang3)
data(BRCASampleData)
modulegenes_WGCNA <- module_WGCNA(ceRExp, mRExp)
# Identify miRNA sponge modules using canonical correlation (CC)
miRSM_WGCNA_CC <- miRSM(miRExp, ceRExp, mRExp, miRTarget,
modulegenes_WGCNA, nperms = 10, method = 'CC')
miRSM_WGCNA_CC_genes <- miRSM_WGCNA_CC[[2]]
library(miRspongeR)
Groundtruthcsv <- system.file("extdata", "Groundtruth.csv", package="miRspongeR")
Groundtruth <- read.csv(Groundtruthcsv, header=TRUE, sep=",")
miRSM.Validate <- module_Validate(miRSM_WGCNA_CC_genes, Groundtruth)