qcplot {methylumi} | R Documentation

## Methods for dealing with control data for Illumina methylation data.

### Description

The `qcplot` function simply generates a plot of the control probe information for a given `controlType`.

### Usage

    qcplot(object,controltype,...)
    controlTypes(object,...)

### Arguments

`object` | An object of class `MethyLumiSet` or `MethyLumiQC`
`controltype` | A single character value representing the bead type to plot from the quality control data. The available types are accessible via the `controlTypes` method.
`...` | passed to plot function

### Details

The descriptions of the various control types can be obtained from the Illumina methylation user's guides.

### Author(s)

Sean Davis <sdavis2@mail.nih.gov>

### See Also

`MethyLumiSet`, `MethyLumiQC`

### Examples

    data(mldat)
    controlTypes(mldat)
    qcplot(mldat,controlTypes(mldat)[3])

[Package methylumi version 2.30.0 Index]