metaSetting-methods {metaMS} | R Documentation

## Get or set values in metaMSsettings objects

### Description

Accessor function for `metaMSsettings` objects, allowing to get or set values from individual slots.

### Methods

`signature(object = "metaMSsettings")`

  Get or set values from individual slots in a `metaMSsettings` objects.

### See Also

`FEMsettings`

### Examples

    ## Not run:
    ## The three sets of settings are created as follows:
    Synapt.NP <- metaMSsettings(protocolName = "Synapt.QTOF.NP",
                                chrom = "LC",
                                PeakPicking = list(
                                  method = "matchedFilter",
                                  step = 0.05,
                                  fwhm = 20,
                                  snthresh = 4,
                                  max = 50),
                                Alignment = list(
                                  min.class.fraction = .3,
                                  min.class.size = 3,
                                  mzwid = 0.1,
                                  bws = c(130, 10),
                                  missingratio = 0.2,
                                  extraratio = 0.1,
                                  retcormethod = "linear",
                                  retcorfamily = "symmetric",
                                  fillPeaks = TRUE),
                                CAMERA = list(
                                  perfwhm = 0.6,
                                  cor_eic_th = 0.7,
                                  ppm= 5))
    metaSetting(Synapt.NP, "match2DB") <- list(
                rtdiff = 1.5,
                rtval = .1,
                mzdiff = 0.005,
                ppm = 5,
                minfeat = 2)
    metaSetting(Synapt.NP, "DBconstruction") <- list(
                minfeat = 3,
                rttol = .3,
                mztol = .01)

    ## End(Not run)

[Package metaMS version 1.20.0 Index]