meshr-package {meshr} | R Documentation

## Enrichment analysis for MeSH terms.

### Description

meshr package conducts a MeSH enrichment analysis employing gene-MeSH annotation data. A hypergeometric test accounting for a multiple tesing correction is used to find significantly enriched MeSH terms.

### Details

Package: | meshr
Version: | 1.2.6
Date: | 3-20-2015
biocViews: | AnnotationData, FunctionalAnnotation, Bioinformatics, Statistics, Annotation, MultipleComparisons
Depends: | R (>= 3.0.1), cummeRbund, org.Hs.eg.db, fdrtool, Category, BiocGenerics, methods, MeSH.db, MeSH.AOR.db, MeSH.PCR.db, MeSHDbi, MeSH.Hsa.eg.db, MeSH.Aca.eg.db, MeSH.Atu.K84.eg.db, MeSH.Bsu.168.eg.db, MeSH.Syn.eg.db
Imports: |
Suggests: |
License: | Artistic-2.0

Index:

    meshHyperGTest performs a hypergeometric statistical test.

Further information is available in the vignettes.

### Author(s)

Gota Morota, Koki Tsuyuzaki, Takeru Nakazato, Itoshi Nikaido

Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>

### See Also

`MeSHHyperGParams-class`, `MeSHHyperGResult-class`, `meshHyperGTest`

### Examples

    ls("package:meshr")

[Package meshr version 1.20.0 Index]