normalizeMethylation.ssn {lumi} | R Documentation

## Shift and scaling normalization of Illumina Infinium methylation data at probe level

### Description

Shift and scaling normalization of Illumina Infinium methylation data at probe level

### Usage

    normalizeMethylation.ssn(methyLumiM, separateColor = FALSE)

### Arguments

`methyLumiM` | a MethyLumiM object includes Illumina Infinium methylation data
`separateColor` | determine whether separately normalize two color channels

### Value

Return an object (same class as input methyLumiM) with updated "methylated" and "unmethylated" data matrix after background level adjustment.

### Author(s)

Pan DU

### See Also

See Also `lumiMethyN`, and `normalizeMethylation.quantile`

### Examples

    data(example.lumiMethy)
    lumiMethy.norm = normalizeMethylation.ssn(example.lumiMethy)

[Package lumi version 2.36.0 Index]