getCytobandColors {karyoploteR} | R Documentation

## getCytobandColors

### Description

Returns a named character vector with the colors of associated with the cytoband names

### Usage

    getCytobandColors(color.table=NULL, color.schema=c("circos", "biovizbase", "only.centromeres"))

### Arguments

`color.table` | (named character vector) if present, it's returned as-is. Useful to specify your own color.tables.
`color.schema` | (character) The name of the color schema to use: `circos`, `biovizBase`, `only.centromeres` (everything in gray, except for centromeres in red). (defaults to `circos`)

### Details

The function returns a named character vector with the colors of associated with the cytoband names. Two color schemas are available: circos (which copies the colors used by Circos) and biovizbase (that gets the cytoband colors from the biovizBase Bioconductor package). If a color.table is given, it is returned untouched.

### Value

a named character vector with the colors associated to each cytoband name

### See Also

`plotKaryotype`, `kpAddCytobands`

### Examples

    getCytobandColors()
    getCytobandColors(color.schema="biovizbase")

[Package karyoploteR version 1.10.5 Index]