46b5ced3517b929ab2fe4cae253054ed *CITATION
d2e8df84c3cf8022ad1dd58740d78b5d *DESCRIPTION
a27543e4f018e7b35b2638ed8fdb14f4 *INDEX
3cc76862f4fdb24b30cc2967a049183a *Meta/Rd.rds
6948813e64a61f0701694447bbf1971e *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
f604db9742e45f93d757fbb3541e3abb *Meta/hsearch.rds
b4e1d876426afdaa75f30f2f1c7cff75 *Meta/links.rds
d4a2c30c73382731763cc9731d09203d *Meta/nsInfo.rds
9875651f1509172335f1cc25f80dc432 *Meta/package.rds
2652332e27c5bb631779e61a3fd76a63 *Meta/vignette.rds
21d7f372069ba69a1a34e655352e3d04 *NAMESPACE
2507a5a02ee2af6b5995fb68b830916b *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/isobar
0ce09aab7c862db1cd5a3d3141785d8b *R/isobar.rdb
59d581a61eb3ca6531fba0e9217eac1b *R/isobar.rdx
c7a5a70ebdebbb43c2e1ca9d1b0adee9 *data/datalist
b8b88836959bc4075f53f0c451dfe60b *data/ib_phospho.rda
0958cc4c886c489dda421ade8b7bddab *data/ibspiked_set1.rda
4a6ea3178279aefddcf6eb26f500e201 *data/ibspiked_set2.rda
20790378db1e8fc09a6ec329b91f2954 *data/noise.model.hcd.rda
163a311cc92f83bdf9f4c42e9128c9c5 *doc/index.html
3657e0dbdcb8fc8951e2fe604c35be02 *doc/isobar-devel.R
00750d7e0d90fea9eb3f348cb9735e75 *doc/isobar-devel.Rnw
a9bc47905fa5c35ab171a7541d49b507 *doc/isobar-devel.pdf
138dec290f8cf6f67c252ca3c007dd16 *doc/isobar-ptm.R
314da331a6a3811b2af10802037391c8 *doc/isobar-ptm.Rnw
4accff9a5fc05acac7ac1bf0f863f248 *doc/isobar-ptm.pdf
9a8eca9752762ff7486109e91215953c *doc/isobar-usecases.R
545d3ef59ef5f85f4b4da438f31e3e86 *doc/isobar-usecases.Rnw
f9d7848cc95e6cff74faef8ab1251276 *doc/isobar-usecases.pdf
ff99a39074b7ca848618af2802a7cb15 *doc/isobar.R
0286bb554d231774371cc1860a6f9e6a *doc/isobar.Rnw
7c7458c107069635e83a86b94a1fbce2 *doc/isobar.pdf
67db5bcb1b2f3e7f10d8ac9f0fa01df4 *help/AnIndex
5c5eef79ceb7190c510d816126eeee2e *help/aliases.rds
55e2f75c55251a3d453dc02cce2ba6ad *help/isobar.rdb
01b4ef164c1060ba14ba165fa81abda4 *help/isobar.rdx
93e72d42742f81d13b319a14d6c30c7a *help/paths.rds
3d5b053e5f27e108cffbc2cdf1a41a7a *html/00Index.html
1c3360032c8639d0dd2a6892421d8147 *html/IBSpectra-class.html
69e22b6409833d698249cf368841bc85 *html/NoiseModel-class.html
7862a7a6ac15fda8cdbc0b9cf0a9e175 *html/ProteinGroup-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f4b23a9b69e65411d2c4dd94f7c35515 *html/TlsParameter-class.html
26e9eb38175551ec8e89c221f707173b *html/Tlsd-class.html
5cba9ae1ce41e6143853cde2d52b9ed5 *html/calc.delta.score.html
5b4aa65f69ff6bf1bc5fbe48893ad7cb *html/calc.startpos.html
cc3e1c723d958586c42bc06ad87d42d7 *html/calculate-pvalues.html
2f9e465e59860f9c05f59c8924e420f5 *html/calculate.dNSAF.html
08e8520a4e954a0e0c81aea4cb7f696f *html/calculate.emPAI.html
8d0ba2bdb4a8dad717668a450877b464 *html/correct.peptide.ratios.html
79b2a377b9b7001d5b21224e7d21a6dd *html/distr-methods.html
73b1821e63f39f29acdab7cd52a3e7e7 *html/fit-distr.html
ee685cc8ac3577bda3cc738fa0835847 *html/getPeptideModifContext.html
857bb67d2efe33f0389bcc7c196a4c4b *html/getPhosphoRSProbabilities.html
616b8a0b51541b44c0a1a6a769faca92 *html/getPtmInfo.html
553df2a8aff21f4b9c9d88139bde7cb2 *html/groupMemberPeptides.html
946f130c015bf4747463634b26cda411 *html/human.protein.names.html
f61762e69ecd16929e426fb4a0b0eeb4 *html/isobar-analysis.html
b70a5326b9fc83e800a6206d85d06769 *html/isobar-data.html
540fa4b187ac22bb81efb650201f8b28 *html/isobar-import.html
3d3cc77824b96a9817616ee9258fbd1e *html/isobar-log.html
51db788abfc7c354c2e900b05347e250 *html/isobar-package.html
314c80ef72e71afa99b5ba60c9f79320 *html/isobar-plots.html
a709e1befa812846fbe3578ecc6925e1 *html/isobar-preprocessing.html
e7d65d4342c875448fa8dc1942201918 *html/isobar-reports.html
950a86e64f783afce032b72bea639eb1 *html/maplot.protein.html
1ea15c688c1383f3e9b5736914743f6f *html/number.ranges.html
0c2ba0fd648bf4c298cf17e387203c2d *html/observedKnownSites.html
d453c6077accca0115dfae8d2991c0fa *html/peptide.count.html
b624c0302b9286c2b4393a569cd15cf6 *html/proteinInfo-methods.html
02591ceed14fb8a03310547f06332a92 *html/proteinNameAndDescription.html
9e7477298b3a1ea35cb41a358c1cb1d1 *html/ratio-summ.html
cef7c950b49a6947ed1e7cfda9eb3efd *html/ratiosReshapeWide.html
03ad81f18197953ad706946e6d4153c9 *html/reporter.protein-methods.html
57fc6a44f616609015b355d519a28d09 *html/sanitize.html
7acc0a2bd35998f5805adf8138aa806b *html/shared.ratios.html
b9964db046f1405899fe1ad4ae542ad7 *html/shared.ratios.sign.html
824a73bb45e4518f20c3815993f91e09 *html/specificities.html
ac2b606d347f006cb8a5d0e30265e79a *html/spectra.count2.html
e29f3d2d992457c8189aab97c1ae2fcb *html/subsetIBSpectra.html
8ebbaee8505ec7d35d31f4e9c43e57fe *html/utils.html
54ed321f998f29130de974dafd05fa79 *html/writeHscoreData.html
f6be05061316d090303d128928ec8b61 *html/writeIBSpectra.html
716d7b0757874cf8599448f4bee9810e *pl/mascotParser.ini
2cca5297323fc2a74017ecd7aea853c7 *pl/mascotParser2.pl
2584f52a48c4f9aa1f66a70a34f49ff9 *pl/mascotParserDelta_defunct.pl
1fd85c5cbbfe521feea3c2b7b58e6d41 *pl/modifconv.csv
161d85c51a7f2283c3d0b84e0429d1d7 *pl/msgfpParser.R
3228f3eec6684af3e5723965b9ea74fa *pl/parsersConfig.xml
91010e7dc5499a269a1afdecbaf810b9 *pl/pidresParser.ini
b2220fae9a1b8bc8bc6e7e00ab96f2da *pl/pidresParser2.pl
4cf5076ba456ba392fa144b2ae228e3a *pl/psx2tab2.pl
005ecccf798ee34040ca6d6219f47ee9 *pl/tab2psx.pl
4f2a0927cd8506c4eea0beef0120e954 *pl/tab2xls.pl
b602208b7fa19d3eb2368c7ce7bb5dfa *pl/tab2xlsx.pl
ce7394b1801aa8b2e9c3f89466c5e55f *report/create_ibspectra.R
847bd2f19c315fcef0d86ee5183c9fc8 *report/create_meta_report.R
1bb294af0062a7fdeffce36e51d3ee23 *report/create_proteingroup.R
0b83a654ee337fa19cc2468561549a6d *report/create_reports.R
4ac135db1b729216469fbb60408af484 *report/isobar-analysis.Rnw
4e4331c28fbbcfb0001d3dab0d66ee14 *report/isobar-qc.Rnw
b29144b3a608f3d62852d92b59aff480 *report/meta-properties.R
67028806951e58f04939bf9d42db0032 *report/properties.R
b272169b767e3f91437feb211b3b1c53 *report/report-utils.tex
