# immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

## Documentation for package ‘immunoClust’ version 1.16.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

immunoClust-package | immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
cell.Classify | immunoClust EMt-iteration on Cell-events given initial Model Parameters
cell.classifyAll | Clustering of Cell-events in the immunoClust-pipeline
cell.ClustData | Model Based Clustering of Data for a pre-defined Number of Clusters
cell.EM | immunoClust EMt-iteration on Cell-events given initial Model Parameters
cell.Estimation | immunoClust EMt-iteration on Cell-events given initial Model Parameters
cell.FitModel | immunoClust EMt-iteration on Cell-events given initial Model Parameters
cell.hclust | Hierarchical Model Based Clustering of Cell-events in the immunoClust-pipeline
cell.InitialModel | Clustering of Cell-events in the immunoClust-pipeline
cell.MajorIterationLoop | Clustering of Cell-events in the immunoClust-pipeline
cell.MajorIterationTrans | Clustering of Cell-events in the immunoClust-pipeline
cell.ME | immunoClust EM-iteration on Cell-events given initial Cluster Membership Assignment
cell.process | Clustering of Cell-events in the immunoClust-pipeline
cell.SubClustering | immunoClust Model Refinement Step in iterative Cell-events Clustering
cell.TestSubCluster | immunoClust Model Refinement Step in iterative Cell-events Clustering
dat.exp | immunoClust Meta-clustering Sample
dat.fcs | immunoClust Cell-clustering Sample
dat.meta | immunoClust Meta-clustering Results Sample
datSplom | Scatterplot Matrix of immunoClust Clustering Results
immunoClust | immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
immunoClust-class | immunoClust-Object
immunoClust.object | immunoClust-Object
immunoClust.package | immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
meta.Clustering | Clustering of Cell-clusters in the immunoClust-pipeline
meta.export | immunoClust Meta-clustering Results Export
meta.exprs | Collecting Data of an immunoClust vector
meta.freqTable | immunoClust Meta-clustering Results Export
meta.hclust | Hierarchical Meta-clustering of Cell-clusters in the immunoClust-pipeline
meta.majorEvents | immunoClust Meta-clustering Results Export
meta.ME | immunoClust EM(t)-iteration on Cell-clusters
meta.Normalize | immunoClust normalization step with the meta.clustering process
meta.numClusters | immunoClust Meta-clustering Results Export
meta.numEvents | immunoClust Meta-clustering Results Export
meta.parMFI | immunoClust Meta-clustering Results Export
meta.plotClusters | Ploting of immunoClust Meta-clustering Results
meta.plotClustersForScatter | Ploting of immunoClust Meta-clustering Results
meta.plotExpClusters | Ploting of immunoClust Meta-clustering Results
meta.plotExpResult | Ploting of immunoClust Meta-clustering Results
meta.plotGate | Ploting of immunoClust Meta-clustering Results
meta.plotGating | Ploting of immunoClust Meta-clustering Results
meta.plotScatter | Ploting of immunoClust Meta-clustering Results
meta.process | Meta-clustering of Cell-clusters in the immunoClust-pipeline
meta.RegNorm | immunoClust normalization procedure
meta.relEvents | immunoClust Meta-clustering Results Export
meta.relEvents2 | immunoClust Meta-clustering Results Export
meta.relEvents3 | immunoClust Meta-clustering Results Export
meta.SubClustering | immunoClust Model Refinement Step in iterative Meta-clustering
meta.TestSubCluster | immunoClust Model Refinement Step in iterative Meta-clustering
plot | Scatterplot of immunoClust Clustering Results
plot-method | Scatterplot of immunoClust Clustering Results
plot.immunoClust | Scatterplot of immunoClust Clustering Results
removed.above | Brief Information of removed Cell-events by immunoClust Cell-event Clustering
removed.below | Brief Information of removed Cell-events by immunoClust Cell-event Clustering
show | immunoClust-Object
show-method | immunoClust-Object
show.immunoClust | immunoClust-Object
splom | Scatterplot Matrix of immunoClust Clustering Results
splom-method | Scatterplot Matrix of immunoClust Clustering Results
splom.immunoClust | Scatterplot Matrix of immunoClust Clustering Results
summary | immunoClust-Object
summary-method | immunoClust-Object
summary.immunoClust | immunoClust-Object
trans.ApplyToData | immunoClust asinh-Transformation
trans.FitToData | immunoClust asinh-Transformation Optimization