b4a3e707a6316173f70f8b7a19f10a56 *DESCRIPTION
02d87f7e5c00da059abe10b27e259326 *INDEX
29a9012941a6bcb26bf0fb4382c5dd75 *LICENSE
360451b4ac4d16649927d1e6c627eeb7 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
08fbef6518a3a052b9f910254c440bee *Meta/hsearch.rds
a1d97ddd5fc78cb8b8f36101b49ab7ec *Meta/links.rds
41c9271ac7d9f41f22a77543a81ba90c *Meta/nsInfo.rds
a3d9a578d96e31270d29cfb76465c4e1 *Meta/package.rds
6fa3f63cd32bbea475e31d29165b42f9 *Meta/vignette.rds
7b007820b3adbfa5633b8c4b086c0e84 *NAMESPACE
cbc7f6cb31ce547c75224498369a95eb *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/icetea
09ec9e01808ea9944224d11cde29eb97 *R/icetea.rdb
ec30a34694a6927e09deb852bfc620da *R/icetea.rdx
d81ababe1141aeea21b05124813d1e41 *doc/index.html
034e10cf6c41d3c1dae8cc3c27917fa1 *doc/mapcap_analysis.R
e9a45049b7fb37f1e1a3bec42fe17b45 *doc/mapcap_analysis.Rmd
28ee5877f541c167a322f12b7f01643a *doc/mapcap_analysis.html
de8b916f9c226200f79c6f55feb85f55 *extdata/bam/embryo1.bam
91e831f3cd3c9f15a9cbc65a5256bdb2 *extdata/bam/embryo1.bam.bai
6f81004281be96947b0a7aec3fd708e9 *extdata/bam/embryo2.bam
d1a7d506ca48f8dfb57fdd27040e8f8f *extdata/bam/embryo2.bam.bai
6f6a1daa30ac3259ea3446b972abcb30 *extdata/bam/embryo3.bam
e9de33af380be5880cfac7aaec779d24 *extdata/bam/embryo3.bam.bai
aec2b788554ef9596a83903bf43de44e *extdata/bam/embryo4.bam
d8936a1cd8f09891df42ecc85f49424a *extdata/bam/embryo4.bam.bai
0c3c740f5e29282a59189275a59021fd *extdata/demult_fastq/embryo1_R1.fastq.gz
bb8a38293ae9c019a76ce993f1acd7ed *extdata/demult_fastq/embryo1_R2.fastq.gz
4b5ba8fca80d6db6eb9a806c1559e828 *extdata/demult_fastq/embryo2_R1.fastq.gz
260725b25ec4e7e437701e2e8f6a6537 *extdata/demult_fastq/embryo2_R2.fastq.gz
d454f40af936e291683c07234337c40b *extdata/demult_fastq/embryo3_R1.fastq.gz
2f4738c18f72cf9bbe1fbe8ac2bf3d2a *extdata/demult_fastq/embryo3_R2.fastq.gz
33836d593cf2d34191e6d9105c28a907 *extdata/demult_fastq/embryo4_R1.fastq.gz
66177ebfbe632de38653de30e626b104 *extdata/demult_fastq/embryo4_R2.fastq.gz
5892afab3371f7e667c4cd3ffa09f4c0 *extdata/filtered_bam/embryo1.filtered.bam
1d08ad34edc7c3dc9969510759247ac8 *extdata/filtered_bam/embryo1.filtered.bam.bai
2cd6075b990efdd8c87fae97df066e06 *extdata/filtered_bam/embryo2.filtered.bam
567e663f982757e1400a5dd3aefd6279 *extdata/filtered_bam/embryo2.filtered.bam.bai
76e22c135d7a09158387e33ca6d1ff9a *extdata/filtered_bam/embryo3.filtered.bam
3648e402b54371182c11737b521615b2 *extdata/filtered_bam/embryo3.filtered.bam.bai
f245afc12a17c7eff49f9d37f803ac72 *extdata/filtered_bam/embryo4.filtered.bam
c417c9d32ffbab6cfb1a11fc6996e409 *extdata/filtered_bam/embryo4.filtered.bam.bai
f9d63ca9f8a24353ec3282ace47b1a41 *extdata/mapcap_test_R1.fastq.gz
c501e7171f176d240536655600de70ed *extdata/mapcap_test_R2.fastq.gz
57e4621cc32dbcd98aac583bcbc152be *extdata/testTSS_grl.rds
2d25320c06c1ce89e17f5eac3b14db60 *extdata/testTSS_merged.bed
c438c1704a666d443a1e360b68a5cbfb *help/AnIndex
9c1550d1808858f19f1ae8ee6f8f84e8 *help/aliases.rds
b86986b7ba0d6c912cf7bc6ea804dfa7 *help/icetea.rdb
282acbda45a6326d9b8f3027521ce571 *help/icetea.rdx
6062469a0bd63ec1ed0893d5fa42c41f *help/paths.rds
a600cdd8d997a3754178b00f06d94a4b *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c20a27d9c6cdd7b48ae424ae7696a22d *html/ResizeReads.html
9d055689360cbf8080b121191cf774a9 *html/activeChrs.html
304d700be2ba7979f8a873a9afd95b18 *html/annotateTSS.html
54c7460dc718e0aafeaca845c959503e *html/check_capSet.html
52b978cf9dc2fd6b717086370c583355 *html/demultiplexFASTQ.html
594d397db0e5d17bbb094f429b34686f *html/detectDiffTSS.html
4d9d9f364522908eb643d558891d91eb *html/detectTSS.html
f09239e3d7fd488498276b6832d458cb *html/diffQCplots.html
ac8c7677e091a491f153418d9a37dd90 *html/exampleCSobject.html
a5c2a46d2383af103bc742033e015b9f *html/exportTSS.html
e92b34647f820801783d956431fd7a00 *html/filterDuplicates.html
2c40e8bdad8cc02cb448e77850a9b7de *html/filterDups.html
bea54b7091cb8677dc184341ffcf925f *html/fitDiffTSS.html
a62ac8509618a1fe00c7c9b2af7ef51b *html/getBamFlags.html
81f36b3fc4c1bade49635d1d661782e0 *html/getChromBins.html
519875ecedc6eb8cc07b76b4126e2278 *html/getChromWindows.html
09f3dcac10b3804c7438338ab3c0d0b8 *html/getGeneCounts.html
e027c1c7fc3ab149b395848d01675dcd *html/getMCparams.html
212445b578df1bcefb0bed7fe102672f *html/getNormFactors.html
5eea483403b979178442a053062712ac *html/get_newfastq.html
2a7fd6f0f4de1b3f4ec0939a99047722 *html/getranks.html
5170a21f2f52b3d9afd464ae08d97687 *html/mapCaps.html
ea41fbfb9e3b53bd0ebd0574b615f837 *html/newCapSet.html
d60beb1605d5f7be01af94b0a91a6f30 *html/numReadsInBed.html
2c4c96041aa15ebe4f835da2fd179913 *html/plotPrecision.html
d8aa30450e2bf283ce90ddb9dbf74d8e *html/plotReadStats.html
119943c38a1d65ab81db0d7b2e851bca *html/plotTSSprecision.html
61bf880f653f53900f1046d5ee744b0a *html/sampleInfo.html
db96cd5e41892fc5699558cdc8b1ff2c *html/splitBAM_byIndex.html
cbf593bb73be0774289bd6d9d6bfbbb4 *html/splitBAM_byRepindex.html
40222bc63f94d415f2dc9c571d13bc33 *html/split_fastq.html
ee1f99edffb8d377be2d48b2e87bb069 *html/splitranks.html
148608ddce51e159efff1a615b7aa8e9 *html/strandBinCounts.html
