Package: iSEE
Title: Interactive SummarizedExperiment Explorer
Version: 1.4.0
Date: 2019-04-13
Authors@R: c(person("Kevin", "Rue-Albrecht", role = "aut", email = "kevin.rue-albrecht@kennedy.ox.ac.uk", comment = c(ORCID = "0000-0003-3899-3872")),
    person("Federico", "Marini", role="aut", email="marinif@uni-mainz.de", comment = c(ORCID = '0000-0003-3252-7758')),
    person("Charlotte", "Soneson", role=c("aut", "cre"), email="charlottesoneson@gmail.com", comment = c(ORCID = '0000-0003-3833-2169')),
    person("Aaron", "Lun", role="aut", email="infinite.monkeys.with.keyboards@gmail.com", comment = c(ORCID = '0000-0002-3564-4813')))
Description: Provides functions for creating an interactive 
    Shiny-based graphical user interface for exploring data 
    stored in SummarizedExperiment objects, including row- and
    column-level metadata. Particular attention is given to 
    single-cell data in a SingleCellExperiment object with 
    visualization of dimensionality reduction results.
Depends: SummarizedExperiment, SingleCellExperiment
Imports: methods, BiocGenerics, S4Vectors, utils, stats, shiny,
        shinydashboard, shinyAce, shinyjs, DT, rintrojs, ggplot2,
        colourpicker, igraph, vipor, mgcv, reshape2, rentrez,
        AnnotationDbi, graphics, grDevices, viridisLite, cowplot,
        scales, dplyr
Suggests: testthat, BiocStyle, knitr, rmarkdown, scRNAseq, scater,
        DelayedArray (>= 0.7.44), Rtsne, irlba, RColorBrewer, viridis,
        org.Mm.eg.db, htmltools
URL: https://github.com/csoneson/iSEE
BugReports: https://github.com/csoneson/iSEE/issues
biocViews: ImmunoOncology, Visualization, GUI, DimensionReduction,
        FeatureExtraction, Clustering, Transcription, GeneExpression,
        Transcriptomics, SingleCell, CellBasedAssays
License: MIT + file LICENSE
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/iSEE
git_branch: RELEASE_3_9
git_last_commit: 6af7a42
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: no
Packaged: 2019-05-03 05:12:56 UTC; biocbuild
Author: Kevin Rue-Albrecht [aut] (<https://orcid.org/0000-0003-3899-3872>),
  Federico Marini [aut] (<https://orcid.org/0000-0003-3252-7758>),
  Charlotte Soneson [aut, cre] (<https://orcid.org/0000-0003-3833-2169>),
  Aaron Lun [aut] (<https://orcid.org/0000-0002-3564-4813>)
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>
Built: R 3.6.0; ; 2019-05-03 13:43:40 UTC; windows
