hyp_show {hypeR}R Documentation

Convert hyper dataframe to an interactive datatable

Description

Convert hyper dataframe to an interactive datatable

Usage

hyp_show(df, simple = TRUE, stylish = FALSE)

Arguments

df

A hyper dataframe

simple

Use true to only include essential dataframe columns

stylish

Use true to add a bootstrap styling theme to datatable

Value

A datatable object

Examples

# Grab a list of curated gene sets
REACTOME <- ex_get("C2.CP.REACTOME")

# Genes involed in tricarboxylic acid cycle
symbols <- c("IDH3B","DLST","PCK2","CS","PDHB","PCK1","PDHA1","LOC642502",
             "PDHA2","LOC283398","FH","SDHD","OGDH","SDHB","IDH3A","SDHC",
             "IDH2","IDH1","OGDHL","PC","SDHA","SUCLG1","SUCLA2","SUCLG2")

# Perform hyper enrichment
hyp <- hypeR(symbols, REACTOME, bg=2522, fdr=0.05)

# Export
hyp_show(hyp)
[Package hypeR version 1.00.0 Index]