gwdf_2012_02_02 {gwascat} | R Documentation

## internal data frame for NHGRI GWAS catalog

### Description

convenience container for imported table from NHGRI GWAS catalog

### Usage

    data("gwdf_2014_09_08")

### Format

A data frame with 17832 observations on the following 34 variables.

Date Added to Catalog

  a character vector

`PUBMEDID`

  a numeric vector

First Author

  a character vector

`Date`

  a character vector

`Journal`

  a character vector

`Link`

  a character vector

`Study`

  a character vector

Disease/Trait

  a character vector

Initial Sample Size

  a character vector

Replication Sample Size

  a character vector

`Region`

  a character vector

`Chr_id`

  a character vector

`Chr_pos`

  a character vector

Reported Gene(s)

  a character vector

`Mapped_gene`

  a character vector

`Upstream_gene_id`

  a character vector

`Downstream_gene_id`

  a character vector

`Snp_gene_ids`

  a character vector

`Upstream_gene_distance`

  a character vector

`Downstream_gene_distance`

  a character vector

Strongest SNP-Risk Allele

  a character vector

`SNPs`

  a character vector

`Merged`

  a character vector

`Snp_id_current`

  a character vector

`Context`

  a character vector

`Intergenic`

  a character vector

Risk Allele Frequency

  a character vector

p-Value

  a character vector

`Pvalue_mlog`

  a character vector

p-Value (text)

  a character vector

OR or beta

  a character vector

95% CI (text)

  a character vector

Platform [SNPs passing QC]

  a character vector

`CNV`

  a character vector

### Note

In versions prior to 1.9.6, The .onAttach function specifies which data frame is transformed to GRanges. This is now managed manually.

### Source

http://www.ebi.ac.uk/gwas/

### Examples

    ## Not run:
    data(gwdf_2014_09_08)
    # try gwascat:::gwdf2GRanges on this data.frame

    ## End(Not run)

[Package gwascat version 2.16.1 Index]