averagePlot {groHMM} | R Documentation

## Returns the average profile of tiling array probe intensity values or wiggle-like count data centered on a set of genomic positions (specified by 'Peaks').

### Description

Supports parallel processing using mclapply in the 'parallel' package. To change the number of processors, use the argument 'mc.cores'.

### Usage

    averagePlot(ProbeData, Peaks, size = 50, bins = seq(-1000, 1000, size))

### Arguments

`ProbeData` | Data.frame representing chromosome, window center, and a value.
`Peaks` | Data.frame representing chromosome, and window center.
`size` | Numeric. The size of the moving window. Default: 50 bp.
`bins` | The bins of the meta gene – i.e. the number of moving windows to break it into. Default +/- 1kb from center.

### Value

A vector representing the 'typical' signal centered on the peaks of interest.

### Author(s)

Charles G. Danko and Minho Chae

[Package groHMM version 1.18.0 Index]