samplepeaksinput {geneXtendeR} | R Documentation

## Sample peaks list to be used as input to geneXtendeR

### Description

A dataset containing the chromosome number, start and stop positions of ChIP-seq peaks along the Rattus norvegicus genome (rn6 assembly). A dataset like this may be used as input to the peaksInput() command, which will sort the dataset by chromosome number and start position.

### Usage

    data(samplepeaksinput)

### Format

A data frame with 25089 rows and 3 variables:

chr

  Chromosome number

start

  Peak start position [in units of base pairs]

end

  Peak end position [in units of base pairs]

### Value

Demonstrates a sample peaks file used as input.

### Examples

    head(samplepeaksinput)
    tail(samplepeaksinput)

[Package geneXtendeR version 1.10.0 Index]