Package: gCrisprTools
Type: Package
Title: Suite of Functions for Pooled Crispr Screen QC and Analysis
Version: 1.12.0
Date: 2019-04-09
Author: Russell Bainer, Dariusz Ratman, Steve Lianoglou, Peter Haverty
Maintainer: Peter Haverty <haverty.peter@gene.com>
Description: Set of tools for evaluating pooled high-throughput screening experiments,
    typically employing CRISPR/Cas9 or shRNA expression cassettes. Contains methods for interrogating
    library and cassette behavior within an experiment, identifying differentially abundant
    cassettes, aggregating signals to identify candidate targets for empirical validation,
    hypothesis testing, and comprehensive reporting.
License: Artistic-2.0
Imports: Biobase, limma, RobustRankAggreg, ggplot2, PANTHER.db,
        rmarkdown, grDevices, graphics, stats, utils, parallel
Suggests: edgeR, knitr, grid, AnnotationDbi, org.Mm.eg.db,
        org.Hs.eg.db, RUnit, BiocGenerics
RoxygenNote: 6.1.1
VignetteBuilder: knitr
biocViews: ImmunoOncology, CRISPR, PooledScreens, ExperimentalDesign,
        BiomedicalInformatics, CellBiology, FunctionalGenomics,
        Pharmacogenomics, Pharmacogenetics, SystemsBiology,
        DifferentialExpression, GeneSetEnrichment, Genetics,
        MultipleComparison, Normalization, Preprocessing,
        QualityControl, RNASeq, Regression, Software, Visualization
NeedsCompilation: no
Depends: R (>= 3.3)
git_url: https://git.bioconductor.org/packages/gCrisprTools
git_branch: RELEASE_3_9
git_last_commit: abeed76
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
Packaged: 2019-05-03 04:32:02 UTC; biocbuild
Built: R 3.6.0; ; 2019-05-03 13:24:05 UTC; windows
