# Transcription Factors Enrichment Analysis

## Documentation for package ‘enrichTF’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

enrichFindMotifsInRegions | Find motifs in all input sequence regions
enrichFindMotifsInRegions-method | Find motifs in all input sequence regions
enrichGenBackground | Generate background regions and reset the size of foreground regions
enrichGenBackground-method | Generate background regions and reset the size of foreground regions
enrichRegionConnectTargetGene | Connect regions with their target genes
enrichRegionConnectTargetGene-method | Connect regions with their target genes
EnrichStep-class | Base class of this package
enrichTFsEnrichInRegions | Test each TF is enriched in regions or not
enrichTFsEnrichInRegions-method | Test each TF is enriched in regions or not
findMotifsInRegions | Find motifs in all input sequence regions
GenBackground | Generate background regions and reset the size of foreground regions
genBackground | Generate background regions and reset the size of foreground regions
MotifsInRegions | Find motifs in all input sequence regions
motifsInRegions | Find motifs in all input sequence regions
PECA_TF_enrich | TF enrichment with PECA model
RegionConnectTargetGene | Connect regions with their target genes
regionConnectTargetGene | Connect regions with their target genes
TFsEnrichInRegions | Test each TF is enriched in regions or not
tfsEnrichInRegions | Test each TF is enriched in regions or not