fullModel {edge} | R Documentation

## Full model equation

### Description

These generic functions access and set the full model for `deSet` object.

### Usage

    fullModel(object)

    fullModel(object) <- value

    ## S4 method for signature 'deSet'
    fullModel(object)

    ## S4 replacement method for signature 'deSet'
    fullModel(object) <- value

### Arguments

`object` | `S4 object`: `deSet`
`value` | `formula`: The experiment design for the full model.

### Value

the formula for the full model.

### Author(s)

John Storey, Andrew Bass

### See Also

`deSet`

### Examples

    # import data
    library(splines)
    data(kidney)
    age <- kidney$age
    sex <- kidney$sex
    kidexpr <- kidney$kidexpr
    cov <- data.frame(sex = sex, age = age)

    # create models
    null_model <- ~sex
    full_model <- ~sex + ns(age, df = 4)

    # create deSet object from data
    de_obj <- build_models(data = kidexpr, cov = cov, null.model = null_model,
    full.model = full_model)

    # extract out the full model equation
    mod_full <- fullModel(de_obj)

    # change the full model in the experiment
    fullModel(de_obj) <- ~sex + ns(age, df = 2)

[Package edge version 2.16.0 Index]