plotMA.se {doseR} | R Documentation

## plotMA.se Function to make MA plot.

### Description

This function generates MA plot.

### Usage

    plotMA.se(se, samplesA, samplesB, scale = NULL,
    xlab = 'A', ylab = 'M', ...)

### Arguments

`se` | A SummarizedExperiment object.
`samplesA` | Either a character vector, identifying sample set A by either replicate name or sample name, or a numerical vector giving the columns of data in the object that forms sample set A.
`samplesB` | Either a character vector, identifying sample set B by either replicate name or sample name, or a numerical vector giving the columns of data in the object that forms sample set B.
`scale` | If given, defines the scale on which the log-ratios will be plotted.
`xlab` | Label for the X-axis. Defaults to 'A'.
`ylab` | Label for the Y-axis. Defaults to 'M'.
`...` | Any other parameters to be passed to the plot function.

### Details

This function makes MA plot from SummExperiment object.

### Value

Returns MA plot.

### Author(s)

AJ Vaestermark, JR Walters.

### References

The 'doseR' package, 2018 (in press).

### Examples

    data(hmel.se)
    plotMA.se(se, samplesA = 'Male', samplesB = 'Female')

[Package doseR version 1.0.0 Index]