97d1cb27e8478d7ae4de59a2de8c86e7 *CITATION
afbe0c2c4cc0e0cd9ab0928c1295a098 *DESCRIPTION
82aad66b16517c9991aa8cae64982337 *INDEX
642be3bef150dc6e5e32ebfde78d788f *Meta/Rd.rds
53bec5bf9775bd2ecd754fae0c2cb8e6 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
fe8083dd02c508d814f8aaa256892045 *Meta/hsearch.rds
2cdd70c79554a77ae78fd7cadb16f678 *Meta/links.rds
9ef501ad3ed6772734c1e948c5c9f7cc *Meta/nsInfo.rds
c9b2e5199b6e2b3833cec472048f7fe4 *Meta/package.rds
11558d86963183d29d4e610865aefe2b *Meta/vignette.rds
e096c80e50b90520bbd9b8ac19805a4c *NAMESPACE
8ada7993428fbe4013f2164a0f29f319 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/deepSNV
aa97f27ca4644bb65d7109ac086321ec *R/deepSNV.rdb
8b038ded523c05988060eca0e7f7ebf7 *R/deepSNV.rdx
eb93e43e868cf6b00523766e2093961c *TODO
3ccecc236923abcec5bf3979f95058ec *data/HIVmix.RData
e5e59d311d41716d436bda6c12d6b6f8 *data/RCC.RData
44fe941582b98ed2fb74a2ff43bd04dc *data/counts.RData
8f473e99da6aea7893fbf4f0967161a5 *data/phiX.RData
39946182d2a7087db51be00e27bfe68e *data/pi.RData
a198b59b439c25594d85e0f8c8afc300 *data/trueSNVs.RData
b668e30fc1bc1b8c1f60ad1dbaff8772 *doc/deepSNV.R
79ea907278cca8011a87b7954bfc02ce *doc/deepSNV.Rnw
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db14767c6110ae0364ac7e64e94d5518 *doc/index.html
92e9aece07ac3612437ffc3be5c5823f *doc/shearwater.R
fc4e56aed626edbec5e35a7c0ac725b0 *doc/shearwater.Rnw
6591edc8c5054f829360f00dac3489e0 *doc/shearwater.pdf
05a586a89e9f687393bba927604f57c0 *doc/shearwaterML.R
866271256074ead132c1e1225b663bac *doc/shearwaterML.Rmd
a8dd18bda60bf80567e20f32969fd1d8 *doc/shearwaterML.html
03adcf464008b8e2642cdb62807764d3 *example/deepSNV-example.R
f3dd841413d42161102b4b371b8b8e8f *example/shearwater-example.R
62e3352bca95588f9d1478ae36f1ed83 *extdata/control.bam
a3507164d703e922651e0e56236bc293 *extdata/control.bam.bai
89aadac87ae16155e52a1d89289428ae *extdata/deepSNV.vcf
965814f871f749638f925cc6f77d2a38 *extdata/shearwater.vcf
42fb5eb22aef228e8ed4b84294131350 *extdata/shearwater2.vcf
f739c8d70ed095483959c826f2cc3f53 *extdata/shearwaterML.vcf
6af3a3077f6d4ab936e1bb777ad8e910 *extdata/test.bam
74ceb014e38fe7f5111bc9d501889a5e *extdata/test.bam.bai
2df1a587bda6e4c60cc283dfd468cbaa *help/AnIndex
76369659101b3e85eca49f125df735ae *help/aliases.rds
3ccd8512069c067977a687509bfb87be *help/deepSNV.rdb
f520bd8c3f56486a094e6dd65bea6398 *help/deepSNV.rdx
ed048b9228aaf622af02f39d4f0aacc4 *help/paths.rds
f2c7f95b3cc92f437c18891a39ec7391 *html/00Index.html
f9259cfa4cdb025bcdad04af8ee73916 *html/Extract-methods.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
80b001d42f407d4dbb6c78d9831d43f7 *html/RCC.html
291ead1c78fb8fd3f3f7435b6c3c3dd3 *html/RF.html
3dd1f38b2f80f80e9551d30c61d1b63e *html/bam2R.html
832a4ec8bc39cc99223a315096196855 *html/betabinLRT.html
3ea13df876a65187faad2f0730e2230b *html/bf2Vcf.html
7bc4dea6290dadbe60fd37ae1bff5120 *html/consensusSequence-methods.html
f6b6b7c7c56f7b144485a9d19228e1e9 *html/control-methods.html
094086ef366f4fc3f716da550e6302a0 *html/coordinates-methods.html
80813c21b029a140680f30e0696e64b7 *html/counts.html
01d2220a3af7b30cf808e42337735798 *html/dbetabinom.html
870f3bc9a452f12fa7130d2a42e9e6e0 *html/deepSNV-class.html
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2d2a72b7f2d1c756c5e5c70b156e3290 *html/estimateDirichlet-methods.html
f5696026e7b5b1165abd2d6020cc1384 *html/estimateDispersion-methods.html
889f3db5c8d7a24a5b98d2eb194988e2 *html/estimateRho.html
95fe2ad314a21465a84a6739a1139c9d *html/loadAllData.html
e314b9bb6c8dc1043d6124312053bf5a *html/makePrior.html
bcae158abe16eb090d64d4030cb45c95 *html/manhattanPlot.html
8b4cee317ea6f9779498a8942e80e5a4 *html/mcChunk.html
aa1b063d1716b4d253e42e69fb1e45fa *html/normalize-methods.html
439074f905223b1b83c5ae2e0aef1eea *html/p.combine.html
4e66dea45b8a9bdaba1e3b6796871341 *html/p.val-methods.html
0b7f9060bb82de0f5efd53c2be560b9a *html/pbetabinom.html
91db4dc813c077aeea0cbbcbc05d53ad *html/phiX.html
7adc0dbc19f2d947063798808f353f3b *html/pi.html
e1970944a80858bff9dfe6417587668c *html/plot.deepSNV.html
dc2e6da3361a4e994fe208428d0f2950 *html/qvals2Vcf.html
65db69bb5a6b0319ae87b3cf3a7d3ce4 *html/repeatMask-methods.html
5372d4654f3b201a0178488e4bc0430f *html/shearwater.html
0993c1bfa2438fa401bd4dc57041d5bc *html/show-deepSNV-method.html
6e6356123b55c6ac84e3d86f698f182f *html/summary-methods.html
59193fa56d8a6112ee7b6846c6b9f20c *html/test-methods.html
313fa2e2ba6b322ff5e10bc3c389049e *html/trueSNVs.html
61d1561476ab02146b915bb7116d2c05 *libs/i386/deepSNV.dll
09626ab474698ff1267061e733e14153 *libs/x64/deepSNV.dll
