19c52a475d83f9ad7ae92b0140f938d9 *CITATION
1cad7f8a59d41d4a67d0b69c6b471ead *DESCRIPTION
3676782fd1acf778c036ae9d33b1790a *INDEX
daa60952e8433db9eb950b04f013a254 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
50b7a4fde144b3e2795cb4f286a75913 *Meta/hsearch.rds
f448d3d31a3c5d35ddd2c067dc527c5b *Meta/links.rds
2169dad7164102badf61c9a7d8793ac8 *Meta/nsInfo.rds
913d51312e2be9d2e8784437331608cf *Meta/package.rds
e1e2850cae61dc17083e58aedf27bd25 *Meta/vignette.rds
a27604b1edc60a03af2328a5c12eed2c *NAMESPACE
1766e68f21d8e76335af29549c82b2c8 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/decompTumor2Sig
c06638bbda96708c5caf96f31b196970 *R/decompTumor2Sig.rdb
ef9502944e48ae8778331f3d40504b52 *R/decompTumor2Sig.rdx
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51fbeeaabacec3643f6b8c7fbca70aad *help/AnIndex
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3ff8fe8cedbc85a42d38a3e7c76dfb46 *help/decompTumor2Sig.rdb
e627b19feb3624ba2cb4364d1398cc30 *help/decompTumor2Sig.rdx
0595a6feb50d9c2aa7c32efc928dcf34 *help/paths.rds
93ac9011358081352954ad29dd96fe82 *html/00Index.html
70c58c9048c4413a4028b90586b08721 *html/QPforSig.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
e3398aaee4eb0607a29fddfa4647d852 *html/addBestSignatureToSubset.html
97d278dea26f95531ecb15d37203bc28 *html/buildGenomesFromMutationData.html
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342f304d40521ad2912d4e8fe2f0fadc *html/composeGenomesFromExposures.html
05705578e60ef0a6e23790889fb15679 *html/computeExplainedVariance.html
be0beb502e8e48a7901286053d3a68fa *html/computeFrobeniusNorm.html
0ba7caae001e7fd05f0485e129e8f4bf *html/computeRSS.html
a8bd2daf56389711323b57f77a11208d *html/convAlx2Shi.html
9fb125a75d6ca663857ec6b16e936843 *html/convertAlexandrov2Shiraishi.html
4d89899f433b1aa43a6421754bcc35f5 *html/convertGenomesFromVRanges.html
3e0a56a5c8c000332b635592bd89e679 *html/decompTumor2Sig-package.html
477423fdae2fee745ed1d3487d1bd4f6 *html/decomposeTumorGenomes.html
2faf65adabd1cae6acbf7be0a7a96fbd *html/determineSignatureDistances.html
f1fc1412c7bcb11f4b08fd5b5aa68933 *html/determineTypeNumBasesAndTrDir.html
6dd436accc72fd8b795958cb21822757 *html/downgradeShiraishiSignatures.html
13d09c069794752a3d98f4f5601759e9 *html/evaluateDecompositionQuality.html
a07937b16f64cc32925aac866f87bdbb *html/getBestDecomp4Ksignatures.html
6e9c915ec5d30b7bce1332b4d6eeb776 *html/getCountData.html
1a6cbe507788aced5b09bd0ca524149c *html/getFeatVectList.html
baf76b52f4951aa682f2bdfee609ce8b *html/getGenomesFromMutFeatData.html
f033c504ab08831f05a0dd55de5cc298 *html/getNumFlankingBases.html
7a380f4e264a8649f13aaa73929d49fc *html/getNumSignatures.html
dc234caa5353a3387b190b879bd2d25a *html/getSampleList.html
4cceabb9aa5003cec50e22296cd58639 *html/getSigFeatDist.html
a7166f93bc15adaab64ef50b1f3a10ea *html/getSigFromEstParam.html
6efcbd32378fce1916763727f25880bd *html/getSigType.html
ccffc369250dacd026e29c0dcc3143ae *html/getSignaturesFromEstParam.html
3332ebbd5f1645ccf01697f2b329e429 *html/haveTrDir.html
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d9df40556730cdafa5e3b73af7a90220 *html/is.probability.data.frame.list.html
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417007610d20022e94a1a2ef2497819d *html/is.probability.vector.html
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8c1a4b346f2ddcfd90f8da8693f8412b *html/isBackGround.html
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469f79900806d6c6c52ea3d3903e74ec *html/isExposureSet.html
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a1f7817457d6cf9c983373788dc98b2b *html/isShiraishiSet.html
666fbc0c391f0a527832b9d718f31bf8 *html/isSignatureSet.html
d8269163bf3a3ca9c3a79de945568dde *html/mapSignatureSets.html
13820d0158e3ae3702517881e837f9ec *html/plotAlexandrovModel.html
24ab77fc4a25610a09657fa83b4ebedf *html/plotDecomposedContribution.html
4a3ce4ef5bde7b48cf83728cc5705684 *html/plotExplainedVariance.html
3ab0cec6dc429762ab6c7d5389496ccb *html/plotMutationDistribution.html
491c7d6dd5ddf4667ec7632ed5cfee69 *html/plotShiraishiModel.html
8468b6094fe01afcda30ae4b75e7d848 *html/processMultipleSigSets.html
2ec895e919f5fa5ab0e38ed76ac117cb *html/readAlexandrovSignatures.html
77bde88e05600775bdd6949b5d16399f *html/readGenomesFromMPF.html
a3603cfabe169bacca308fc241c79c89 *html/readGenomesFromVCF.html
aa5a0c22faca6d62bfb265b8bd727947 *html/readShiraishiSignatures.html
dfbdf177a60096838d2e8fc71ee20518 *html/roundIntegerSum.html
b05abbb9c9b4f861e4e5e069bf4fd450 *html/sameSignatureFormat.html
67efe081b384062260d5b4ee8d7a478f *html/setNames4ShiraishiTable.html
2e210e61d2af86d4ff97cf7cab7d8714 *html/setNumFlankingBases.html
aed12d8737e5f41d50e28403d401c997 *html/setSigFeatDist.html
dad7a0bb41a648b03b9fde45ed4de384 *html/setSigType.html
c2a609d1e84faa594da1f38ed666355e *html/setTrDir.html
94d55d512a9ba36caa9b7df079bae19f *license/COPYING
9f94f627b12210584ac8cbd72cff5bb3 *script/Alexandrov_PMID_23945592_435_tumors-pmsignature-15sig.R
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