plotShiraishiModel {decompTumor2Sig} | R Documentation

## plotShiraishiModel (internal function)

### Description

'plotShiraishiModel()' plots a single signature or the mutation frequency data for a single genome of the Shiraishi-type model.

### Usage

    plotShiraishiModel(mutData, numBases, trDir, colors = NULL)

### Arguments

`mutData` | (Mandatory) The signature or genome mutation frequency data to be plotted.
`numBases` | The number of bases of the sequence pattern.
`trDir` | Logical value specifying whether transcription strand information is present.
`colors` | Vector of four colors to be used for the base data. If `NULL` (default), the colors are consensus colors used for sequence logos.

### Value

Returns (or draws) a plot according to the Shiraishi model of mutational signatures.

### Author(s)

Rosario M. Piro
Freie Universitaet Berlin
Maintainer: Rosario M. Piro
E-Mail: <rmpiro@gmail.com> or <r.piro@fu-berlin.de>

### References

http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2018) decompTumor2Sig: Identification of mutational signatures active in individual tumors. BMC Bioinformatics (accepted for publication).
Krueger, Piro (2017) Identification of Mutational Signatures Active in Individual Tumors. NETTAB 2017 - Methods, Tools & Platforms for Personalized Medicine in the Big Data Era, October 16-18, 2017, Palermo, Italy. PeerJ Preprints 5:e3257v1, 2017.

[Package decompTumor2Sig version 2.0.0 Index]