# Differential co-expression/association network analysis

## Documentation for package ‘dcanr’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

cor.pairs | Fast pairwise correlation estimation
dcAdjust | Adjust for multiple testing in differential association analysis
dcEvaluate | Evaluate performance of DC methods on simulations
dcMethods | Get names of differential co-expression methods
dcNetwork | Generate a differential network from a DC analysis
dcPipeline | Run a DC pipeline on a simulation
dcScore | Compute scores from differential association analysis
dcScore-method | Compute scores from differential association analysis
dcTest | Statistical test for differential association analysis
getConditionNames | Get data and conditions from a given knock-down (KD)
getSimData | Get data and conditions from a given knock-down (KD)
getTrueNetwork | Get data and conditions from a given knock-down (KD)
mi.ap | Mutual information using adaptive partitioning
perfMethods | Get names of performance metric methods
performanceMeasure | Performance metrics to evaluate classification
plotSimNetwork | Plot source and true differential networks from simulations
sim102 | Simulated expression data with knock-outs