Package: countsimQC
Type: Package
Title: Compare Characteristic Features of Count Data Sets
Version: 1.2.0
Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"), 
    email = "charlottesoneson@gmail.com", comment = c(ORCID = "0000-0003-3833-2169")))
Description: countsimQC provides functionality to create a comprehensive report 
    comparing a broad range of characteristics across a collection of count 
    matrices. One important use case is the comparison of one or more synthetic 
    count matrices to a real count matrix, possibly the one underlying the 
    simulations. However, any collection of count matrices can be compared.
License: GPL (>=2)
Encoding: UTF-8
Depends: R (>= 3.5)
Imports: rmarkdown (>= 0.9.5), edgeR, DESeq2 (>= 1.16.0), dplyr, tidyr,
        ggplot2, grDevices, tools, SummarizedExperiment, genefilter,
        DT, GenomeInfoDbData, caTools, randtests, stats, utils, methods
RoxygenNote: 6.1.0
Suggests: knitr, testthat
VignetteBuilder: knitr
biocViews: Microbiome, RNASeq, SingleCell, ExperimentalDesign,
        QualityControl, ReportWriting, Visualization, ImmunoOncology
Collate: 'calculateCorrelations.R' 'calculateDispersionsddsList.R'
        'calculateStats.R' 'countsimExample.R'
        'countsimExample_dfmat.R' 'makeDF.R' 'countsimQCReport.R'
        'generateIndividualPlots.R'
git_url: https://git.bioconductor.org/packages/countsimQC
git_branch: RELEASE_3_9
git_last_commit: 0a0b1c8
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: no
Packaged: 2019-05-03 05:32:15 UTC; biocbuild
Author: Charlotte Soneson [aut, cre] (<https://orcid.org/0000-0003-3833-2169>)
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>
Built: R 3.6.0; ; 2019-05-03 13:08:11 UTC; windows
