collect_classes-HierarchicalPartition-method {cola} | R Documentation

## Collect classes from HierarchicalPartition object

### Description

Collect classes from HierarchicalPartition object

### Usage

    ## S4 method for signature 'HierarchicalPartition'
    collect_classes(object, depth = max_depth(object),
        anno = get_anno(object[1]), anno_col = get_anno_col(object[1]))

### Arguments

`object` | A `HierarchicalPartition-class` object.
`depth` | Depth of the hierarchy.
`anno` | A data frame of annotations for the original matrix columns. By default it uses the annotations specified in `hierarchical_partition`.
`anno_col` | A list of colors (color is defined as a named vector) for the annotations. If `anno` is a data frame, `anno_col` should be a named list where names correspond to the column names in `anno`.

### Details

The function plots the hierarchy of the classes.

### Value

No value is returned.

### Author(s)

Zuguang Gu <z.gu@dkfz.de>

### Examples

    data(cola_rh)
    collect_classes(cola_rh)
    collect_classes(cola_rh, depth = 2)

[Package cola version 1.0.1 Index]