200b47bb4bd7aae6b3a886b37c57390e *DESCRIPTION
9f2ac2d2dd49d3d9bc3741a904441862 *INDEX
ad493592b6929a9b6be0b52e084c98df *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
0b14d12645ba224f3122e279829c83e0 *Meta/hsearch.rds
875f45e0bcb49a93d1c6bc87a6624dfd *Meta/links.rds
34427be1483ec243d5415c6e1fd5e748 *Meta/nsInfo.rds
70871bf935014992a53f11229e6d2542 *Meta/package.rds
fe4b365e73b98e558aa59f2d0474cd37 *Meta/vignette.rds
7e3da990014f52ce3954dbd8a460f192 *NAMESPACE
dd6be23167e8b793ac67c79c001ad3e7 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/cobindR
6b2a133dc095a7d9a7dde86b06418785 *R/cobindR.rdb
4dd678d62d67b195afb753ac6e4d33a4 *R/cobindR.rdx
ded51f71ec4570726e53717786f79c40 *doc/cobindR.R
496990aaee83d98ebd2a166ebf4593bc *doc/cobindR.Rnw
451e0ba2caa581f66df6bd45d1506eb8 *doc/cobindR.pdf
e7225ab133401680051ebb071580b06b *doc/index.html
39be6d459717859da6cda86dcf79ceb1 *extdata/config_default.yml
11654be8f877d9f1dcf4050a7d6e2046 *extdata/example.fasta
2c46ba771fab025d9caa0c6f5d4ad8ba *extdata/pfms/myod.tfpfm
ee0c1768d0850b04bf7dd4279f23bfff *extdata/pfms/soxoctklf.tfpfm
96a7c45735d76974e4c96bd5ddd4d987 *extdata/sox_oct_example_vignette_seqs.fasta
043b0ae785ff9dd7f9ba9cc6e00866de *extdata/ucsc_example_ItemRGBDemo.bed
48119dc94fcce51bfedadd539ac00b8c *help/AnIndex
8f9cc3c7580f74024bef4cd0c2bce28d *help/aliases.rds
71c408dee5b42aa0e5460855a335ad51 *help/cobindR.rdb
97b4dbfc8be3983d7e36f8d80fe46407 *help/cobindR.rdx
e63c8cf0d3d920246477be44b597a62e *help/paths.rds
507a2a163768e53757151b38edcd3a29 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4e5ad61cfdcc33ea976b3169d0850539 *html/SeqObj-class.html
d8399b37f4188ead992c715f7ff4c2c0 *html/bg_binding_sites.html
63985e5469d53092ac0d1f1b842ade44 *html/bg_pairs.html
7a7afa3de29d3d5b7394a78ed0dfb3c6 *html/bg_sequence_origin.html
063a2220198c7b748840ce179240f66d *html/bg_sequence_source.html
0401a6e1b2054d8ec2a2f78426d6daf0 *html/bg_sequence_type.html
673383170d04a14d535ee4dcf03a1d38 *html/bg_sequences.html
75fc90fe1c6e5e15c080ec9a3a45b796 *html/binding_sites.html
f1627ad8f24596eceedfa263efac4ccb *html/cobindRConfiguration.html
01cc465a8803faf45d285b01ae988b79 *html/cobindr-class.html
bea8cd25bf4b14ace2e930520d058df6 *html/cobindr-internal.html
71372a0695b029c07a92397e50eac973 *html/cobindr-package.html
2c7e145336acfeaf9197d979fa49e993 *html/comment.html
15fa224a26d2c3dd93d38b46314625c3 *html/configuration-class.html
cff170cfc3df1adc543144555c1cb80f *html/configuration.html
df009bb4f66123f2e32dd573f1d1d600 *html/downstream.html
9b31b0ca7635454353657b03925c7a8e *html/experiment_description.html
861cd592a33acf79f14e3f601a40ae63 *html/fdrThreshold.html
130e40a29a47ab8b0ae09248d685c73c *html/find.pairs.html
6f3b6711306effff9deb7d8b4f9b0ca1 *html/get.bindingsite.ranges.html
491f39609939090f15c710ea79a403eb *html/get.pairs.html
0c334ab1f4e417714842c35e7dd1fb6d *html/get.significant.pairs.html
51522c1d419d5d49b44c6a452ac8c0fe *html/id.html
8abc69ded3186f54633d38a8e51e504f *html/location.html
b6753e163378f5b67d85f45c9f4fbc26 *html/mart.html
34fca6e374736d001093a197aef47498 *html/max_distance.html
1325bdbc38c041ce91cc09d2279eff2d *html/name.html
1a78c6a812aa26d24abcdbcb7a3fcb06 *html/pValue.html
e4a7362daec98a9ad7515ec993b2a4fe *html/pairs.html
32c4da02e8823b81e70607620fc184f6 *html/pairs_of_interest.html
0b595c9d5b58e8b1920b9af47490b1ce *html/path.html
5cacefa7eb762c40a2ca9cbd6628b794 *html/pfm.html
581ea1f30bebe64d76fa6a08d3c1bd25 *html/pfm_path.html
a7a1cdbd303ce67bd9e314fdca177074 *html/plot.detrending.html
0d409027afaaccd16c4213f66ada14e6 *html/plot.gc.html
f6e7278eebe3045db6f6682288d33265 *html/plot.pairdistance.html
1219a2a9dea7e9959b9467c338c36b62 *html/plot.pairdistribution.html
9edb2a9737bf70dfb9eadd4c1dab7eb0 *html/plot.positionprofile.html
b7eaad86e4f542001291ddd4141322de *html/plot.positions.html
57f8037aff118d73b54b64212f376fec *html/plot.positions.simple.html
c837b9bfb79fef8764c522b2e315e509 *html/plot.tfbs.heatmap.html
cfd4a18eb9945f77dee67d264f54c7e2 *html/plot.tfbs.venndiagram.html
6bd76c14e70f02fcb8519bbbd13a9756 *html/plot.tfbslogo.html
a657e968582307f4a34626a9a30df02d *html/predicted2pwm.html
ed200399b98fd2618dce2cad8ba0acfa *html/pseudocount.html
42c617782d9917bf9b83df3922563576 *html/rtfbs.html
fde5d8711845b930d107ba52ef752a7c *html/search.gadem.html
6802f24093a08adf0672d27af9c272cc *html/search.pwm.html
64204d3cace0dd48e023c69c039bbe04 *html/seqObj.html
7fac5c7b3531201f1c6044346ea76d38 *html/sequence.html
6d23d0afdcc07de237fdceb81a1f9866 *html/sequence_origin.html
a3506873a85e9ec0842671bcaae083ae *html/sequence_source.html
c78971d9990bfa7fb55e816831a363ca *html/sequence_type.html
61f28f873599302ef8c04fb5d224f635 *html/sequences.html
3bc70d3d4057d521670e9d2e84c42000 *html/species.html
9548c2ec28354fbe4103c4494c3f2394 *html/testCpG.html
0a80dd421ff113a5ec0ba2c5b5a92824 *html/threshold.html
b412f3faba23a35bc3827e471de61f8e *html/uid.html
69572d7c0a0f8ebcdcdea20bc850bbf5 *html/upstream.html
2d639ec283e006d0fb9e4ed618e53a63 *html/write.bindingsites.html
f12ca28c33b213d187d708461778bd71 *html/write.bindingsites.table.html
6c479775c47980ec5dbc5bf465d5ca1c *html/write.pairs.html
8895681f85e7686db5f922ecd848f76f *html/write.sequences.html
b4211ebec6d576c6ab65ba3550d06864 *unitTests/runit-cobindR.R
c60cdccdabfc9bd25185e628114f7ae0 *unitTests/runit-configuration.R
