genesName_ENSEMBL {coMET} | R Documentation

## Obtain the genes names in the genomic regions of interest from ENSEMBL

### Description

Obtain the genes names in the genomic regions of interest from ENSEMBL

### Usage

    genesName_ENSEMBL(gen, chr, start, end, dataset)

### Arguments

`gen` | the name of the genome
`chr` | the chromosome of interest
`start` | the first position in the region of interest (the smallest value)
`end` | the last position in the region of interest (the largest value)
`dataset` | Name of the database to select genes

### Details

Can be null

### Value

List of name of genes found in this region of interest.

### Author(s)

Tiphaine Martin

### References

go to ENSEMBL

http://bioconductor.org/packages/release/bioc/html/Gviz.html

### See Also

`ISCA_UCSC`, `GWAScatalog_UCSC`, `knownGenes_UCSC`, `GeneReviews_UCSC`, `GAD_UCSC`, `genes_ENSEMBL`, `xenorefGenes_UCSC`, `transcript_ENSEMBL`,

### Examples

    library("Gviz")
    gen <- "hg38"
    chr <- "chr7"
    start <- 38290160
    end <- 38303219

    if(interactive()){
      dataset<- "hsapiens_gene_ensembl"
      geneNameEnsembl<- genesName_ENSEMBL(gen,chr,start,end,dataset)
      geneNameEnsembl
    } else {
      data(geneNameEnsembl)
      geneNameEnsembl
    }

[Package coMET version 1.16.0 Index]