SampleData {coGPS} | R Documentation

## Sample Data for coGPS

### Description

Here we present an example of coGPS analysis.

### Arguments

`Exon_exprs_matched` | Expression data for 44 tumors and 25 normals. Each row indicates a gene with row name showing gene name and each column indicates a sample with column name showing sample name.
`Exon_class_matched` | A length 69 vector showing status of corresponding exon samples, 0 for normals and 1 for tumors.
`Methy_exprs_matched` | Methylation data for 44 tumors and 25 normals.
`Methy_class_matched` | A length 69 vector showing status of corresponding methylation samples, 0 for normals and 1 for tumors.
`CNV_exprs_matched` | Copy number data for 44 tumors and 25 normals.
`CNV_class_matched` | A length 69 vector showing status of corresponding copy number samples, 0 for normals and 1 for tumors.
`Hs.gmtl.c1` | Broad Institute C1 Positional Gene Sets.

### Details

In this application, the columns of each data type are matched. In other words, the first columns of Exon_exprs_matched, Methy_exprs_matched and CNV_exprs_matched correspond to the same patient. And hence the Exon_class_matched, Methy_class_matched and CNV_class_matched are identical. However, suppose in applications that we are not concerned with the outlier gene list for each patient, we can leave with the samples (columns) unmatched.

[Package coGPS version 1.28.0 Index]