scores {chromstaR} | R Documentation

## chromstaR scores

### Description

Various scores used in `chromstaR`.

### Usage

    differentialScoreMax(mat, info, FUN = "-")

    differentialScoreSum(mat, info, FUN = "-")

### Arguments

`mat` | A matrix with posterior probabilities, read counts or any other matrix with these dimensions. Column names must correspond to the ID entries in `info`.
`info` | An `experiment.table` with additional column 'ID'.
`FUN` | A function to compute the score with.

### Value

A numeric vector.

### Functions

- `differentialScoreMax`: Maximum differential score. Values are between 0 and 1. A value of 1 means that at least one mark is maximally different between conditions.

- `differentialScoreSum`: Additive differential score. Values are between 0 and N, where N is the number of marks. A value around 1 means that approximately 1 mark is different, a value of 2 means that 2 marks are different etc.

### Author(s)

Aaron Taudt

[Package chromstaR version 1.10.0 Index]