profileClusters {chroGPS} | R Documentation

## Assess epigenetic profiles for genes present in each cluster as obtained by the `clusGPS` function.

### Description

Assess epigenetic profiles for genes present in each cluster as obtained by the `clusGPS` function.

### Usage

    profileClusters(x, clus, clusName = NULL, normalize = FALSE, mc.cores = 1, ...)

### Arguments

`x` | Matrix or data.frame with epigenetic profiles used to generate chroGPS-genes map. See `distGPS`.
`clus` | A valid `clusGPS` object from the chroGPS-genes map generated from x.
`clusName` | If desired, the name of a clustering solution within the `clusGPS` object. See `clusNames`.
`normalize` | Normalize epigenetic profile information with respect to whole genome (to assess enrichments/depletions).
`mc.cores` | Cores to use in call to parallel::mclapply.
`...` | Additional arguments.

### Value

Data frame with epigenetic enrichment profiles for all clusters (rows) and epigenetic factors (columns), to be used for downstream assessments or visualization (heatmaps).

### Author(s)

Oscar Reina.

### See Also

`distGPS`, `clusGPS`.

### Examples

    ## Not run

[Package chroGPS version 2.2.0 Index]