87da6b4e55a2610f7384c43e1ed9751b *CITATION
a0149bb178c6dc7c7491843a099b5431 *DESCRIPTION
32eb12d7464d6aefd76cbac9d256fcfe *INDEX
0e9d85d6327e069ce40f0b4b9c227757 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
4f569c59c54cdb0c7faa8b112531237e *Meta/hsearch.rds
5ac8b37dc5caea35f206e46b1e493c17 *Meta/links.rds
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7da79d7eb67acf16c3b47c0a2606b603 *Meta/package.rds
f7c7c58d27b0772dde782c7b933d432e *Meta/vignette.rds
34d63c8de3a7d64927f016cb112be86f *NAMESPACE
44bf771963a999485ec375203ff141e8 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/chimera
5d2e5adbd9279c3572f8b028e1f3da4a *R/chimera.rdb
ae33dff4578d6b8a861832b5d7a1c638 *R/chimera.rdx
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ed66ceb68482d7e52fed5951c94484a6 *doc/chimera.Rnw
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9ccf27daf3794011ffe1635b8c8ba155 *doc/index.html
f1a31d70585ba05625885ff865f34fd5 *examples/Edgreen_fm.txt
b57ff34cd2f1aa0bfc9d14cbbf87442c *examples/Edgren_cs.txt
152c55b75090f883955f048f2d9fe35d *examples/Edgren_df.tsv
c159f47c7c39b4f0b1823fd150e223b2 *examples/Edgren_true.positives.txt
2faba782f61897fb1319300091d58d6e *examples/SULF2_ARFGEF2.fa
9ab4df2bc9cc084a9454bc7e4f073188 *examples/defuse_TP_FP.txt
302facd0bcc2ee5f4d7135646ad1721d *examples/edgren.stat.detection.txt
c67548992c68b3a43d14e31c0c921f52 *examples/fset_ARFGEF2-SULF2.rda
5cefa5be16527f831323b9f67bb11f13 *examples/mcf7.FMFusionReport
10bd6253adbee50ede9e25ef6ee874d0 *examples/mcf7_sample_1.fq
69b7f605646866d6881f21384e9e89da *examples/mcf7_sample_2.fq
a72fdea74c7ad1536707aeeaae4cf004 *examples/mcf7_trs_accepted_hits.bam
25b948c6dd395485bd9e5d62a432b0b1 *examples/uc002xtx.4-272_uc010zyd.2-988.fa
c15d087b75f5024b71b68d8e6dfae9fc *examples/uc002xtx.4-272_uc010zyd.2-988_R1.fastq
736dd356c6e5cc9fe12be768e8b9b95e *examples/uc002xtx.4-272_uc010zyd.2-988_R2.fastq
836a3e68c55bf760fa1849d15115f204 *examples/uc002xvp.1-243_uc002iyu.4-1031.fa
6764ab1e04832069f932c6d5570347ec *examples/uc002xvp.1-243_uc002iyu.4-1031_R1.fastq
8718b127a343845ce4bf4f51362aeb1f *examples/uc002xvp.1-243_uc002iyu.4-1031_R2.fastq
1f392fb664bca97839899b6ca935aed1 *help/AnIndex
4df1e581b69a99e95fa89e3a7fa6bb53 *help/aliases.rds
1fd50fb5bc50a4c9487b48ffde768da6 *help/chimera.rdb
dc36c82fd4f0d2477ba7e975046ea460 *help/chimera.rdx
50a2bcf477b6aff3eb40de0487fab854 *help/paths.rds
57ff36208e5d0ea8b868095a678247d3 *html/00Index.html
ec81f53fe26249dee38d107ea26e0eef *html/MHmakeRandomString.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
dd3e3ddd07205e2975b8e2dad3132668 *html/bam2fastq.html
0272965d11bc5576626187a3320f08e9 *html/breakpointOverlaps.html
83f62a94648727c6d642a8593946d134 *html/chimera-package.html
2be7ab99044aeb2367e43c965aab392c *html/chimeraSeqSet.html
c55a36c4601a9e774703c6e9ca6466c4 *html/chimeraSeqs.html
228c4f93896fed33e0b49bb76db0f7fc *html/class.fSet.html
16b7fdbc77ecfe15882af9cfb9b09d20 *html/defuseTPTN.html
10345363020b89b93be3daeb1ebc7b19 *html/filterList.html
87add1338e3735d21b752d9cdfb84743 *html/filterSamReads.html
ac3a49f99a29993c5a1829c4b9db7d35 *html/fusionName.html
1507349eb5dfce5843ab936c2f38b304 *html/fusionPeptides.html
9f63dd6eccc38e27daebf46d8cf75f1a *html/gapfillerInstallation.html
0f36a70cf071670762ed20299f3f842f *html/gapfillerRun.html
f12c926625cdf34b3a277f41880e87ce *html/gapfillerWrap.html
559f9f46a93173ab23b9e8f559eb9d1b *html/importFusionData.html
53093c22f5bfae4a1b4ba12e3a7dd3db *html/is.fSet.html
74d0a5158ba190405c31c6e3c03fab12 *html/newfSet.html
bd0dcdb09ba05c2c658440c112619a21 *html/oncofuseInstallation.html
e3e5b66ddea7958c14e08915465ceede *html/oncofuseRun.html
900703c2cd7ecd9bc313477dd2f5a477 *html/picardInstallation.html
9c73ad77fb46e47948a2bee9805fae60 *html/plotCoverage.html
481a4181fdd616854fee97895a5660ec *html/prettyPrint.html
064a9839c1c26d0dd710b4bd69b33d76 *html/removingErrorLine.html
416502c590be13334f7aed3d2dcf4b53 *html/starInstallation.html
11864eed58c2d34b898bf1775ed1d3a7 *html/starReads.html
be520d7b1a14cb26e23d31e81bfba432 *html/starRun.html
f0fa19dff279ad9fde5c7873299b02fb *html/subreadRun.html
e31ee6690ad54a862674cf7b430222ce *html/supportingReads.html
58d0b20b0ab07a1798cd4bf9e48da762 *html/tophatInstallation.html
ef634f8226cb7fc9d2d14b63f9c3519c *html/tophatRun.html
4a6809cc44aa87e2db9a7054e0f2c4b0 *html/validateSamFile.html
416f7ca1d4fbd16090a455b0f2f66d04 *libs/i386/chimera.dll
2a40aea6661589c5e1582968c7a1a57c *libs/x64/chimera.dll
