convertOldCellHTS {cellHTS2} | R Documentation

## Convert an old S3 class cellHTS object to the new S4 class cellHTS object

### Description

Convert an old S3 `cellHTS` object (from the `cellHTS` package) into one or several S4 `cellHTS` objects (from the `cellHTS2` package).

### Usage

    convertOldCellHTS(oldObject)

### Arguments

`oldObject` | an S3 class `cellHTS` object obtained using the package `cellHTS`.

### Value

The function returns a list containing one or more `cellHTS` objects. The element `raw` contains the unnormalized data from `oldObject`. Depending on the state of `oldObject` (on whether it is normalized and scored), the other components of this list can be: `normalized`, an S4 `cellHTS` object containing the normalized data, and `scored`, an S4 class `cellHTS` object containing the scored data.

### Author(s)

Ligia P. Bras ligia@ebi.ac.uk

### References

Boutros, M., Bras, L.P. and Huber, W. (2006) Analysis of cell-based RNAi screens, Genome Biology 7, R66.

### See Also

`updateCellHTS`

### Examples

        data("oldKcViabSmall")
        out <-  convertOldCellHTS(oldKcViabSmall)
        names(out)
        out[["raw"]]

[Package cellHTS2 version 2.48.0 Index]