featureModuleLookup,celda_CG-method {celda} | R Documentation

## Lookup the module of a feature

### Description

Finds the module assignments of given features in a 'celda_G()' model

### Usage

    ## S4 method for signature 'celda_CG'
    featureModuleLookup(counts, celdaMod, feature,
      exactMatch = TRUE)

### Arguments

`counts` | Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celdaMod'.
`celdaMod` | Model of class 'celda_CG'.
`feature` | Character vector. The module assignemnts will be found for feature names in this vector.
`exactMatch` | Logical. Whether an exact match or a partial match using 'grep()' is used to look up the feature in the rownames of the counts matrix. Default TRUE.

### Value

List. Each element contains the module of the provided feature.

### See Also

'celda_CG()' for clustering features and cells

### Examples

    data(celdaCGSim, celdaCGMod)
    module <- featureModuleLookup(celdaCGSim$counts,
        celdaCGMod,
        c("Gene_1", "Gene_XXX"))

[Package celda version 1.0.4 Index]