simulateCellscelda_C {celda} | R Documentation

## Simulate cells from the celda_C model

### Description

Generates a simulated counts matrix, cell subpopulation clusters, and sample labels according to the generative process of the celda_C model.

### Usage

    simulateCellscelda_C(model, S = 5, CRange = c(50, 100),
      NRange = c(500, 1000), G = 100, K = 5, alpha = 1, beta = 1,
      seed = 12345, ...)

### Arguments

`model` | Character. Options available in 'celda::availableModels'.
`S` | Integer. Number of samples to simulate. Default 5.
`CRange` | Vector of length 2 given the range (min, max) of number of cells for each sample to be randomly generated from the uniform distribution. Default c(50, 100).
`NRange` | Integer vector. A vector of length 2 that specifies the lower and upper bounds of the number of counts generated for each cell. Default c(500, 1000).
`G` | Integer. The total number of features to be simulated. Default 100.
`K` | Integer. Number of cell populations. Default 5.
`alpha` | Numeric. Concentration parameter for Theta. Adds a pseudocount to each cell population in each sample. Default 1.
`beta` | Numeric. Concentration parameter for Phi. Adds a pseudocount to each feature in each cell population. Default 1.
`seed` | Integer. Passed to with_seed. For reproducibility, a default value of 12345 is used. If NULL, no calls to with_seed are made.
`...` | Additional parameters.

### Value

List. Contains the simulated matrix 'counts', cell population clusters 'z', sample assignments 'sampleLabel', and input parameters.

### See Also

'celda_G()' for simulating feature modules and 'celda_CG()' for simulating feature modules and cell populations.

### Examples

    celdaCSim <- simulateCells(model = "celda_C", K = 10)
    simCounts <- celdaCSim$counts

[Package celda version 1.0.4 Index]