get_limma_top_table_with_ci {celaref} | R Documentation

## get_limma_top_table_with_ci

### Description

Internal function that wraps limma topTable output but also adds upper and lower confidence intervals to the logFC. Calculated according to https://support.bioconductor.org/p/36108/

### Usage

    get_limma_top_table_with_ci(fit2, the_coef, ci = 0.95)

### Arguments

`fit2` | The fit2 object after calling eBayes as per standard limma workflow. Ie object that topTable gets called on.
`the_coef` | Coeffient. As passed to topTable.
`ci` | Confidence interval. Number between 0 and 1, default 0.95 (95%)

### Value

Output of topTable, but with the (95 for the logFC.

### See Also

`contrast_the_group_to_the_rest_with_limma_for_microarray` Calling function.

[Package celaref version 1.2.0 Index]