GSEA.Analyze.Sets {canceR} | R Documentation

## GSEA.Analyze.Sets

### Description

http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/R-GSEA_Readme

### Usage

    GSEA.Analyze.Sets(directory,topgs="",non.interactive.run= FALSE,height=12,width=17)

### Arguments

`directory` | `directory= fname.Output`
`topgs` | `topgs = 20`
`non.interactive.run` | `non.interactive.run= FALSE`
`height` | `height=16`
`width` | `width=16`

### Value

GSEA.Analyze.Sets

### Author(s)

Subramanian, Tamayo, et al. (2005, PNAS 102, 15545-15550) and Mootha, Lindgren, et al. (2003, Nat Genet 34, 267-273)

### References

http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page.

### Examples

    ## Not run:
    ## Load workspace
    readRDS(paste(path.package("canceR"),"/extdata/rdata/ucec_tcga_pubGSEA1021.rds", sep=""))
    ##Run.GSEA()

    ## End(Not run)

[Package canceR version 1.18.6 Index]