plotBioNetCircos {caOmicsV} | R Documentation

## Default Plot Method for caOmicsV bioNetCircos Layout

### Description

A sample way to plot sample information and genomic data with default settings. This method is mainly for demo purpose. In most cases, users need make changes based on this display, specifically the igraph layout.

### Usage

        plotBioNetCircos(dataSet, graph=NULL, heatmapMax=NULL, heatmapMin=NULL,
                heatmapColor="BlueWhiteRed")

### Arguments

`dataSet` | an object returned from method of getESet() that contains all data for plot
`graph` | an igraph object generated with one plot dataset, e.g, gene expression value
`heatmapColor` | character vector, one of "BlueWhiteRed", "GreenWhiteRed", "GreenYellowRed", "GreenBlackRed", "YellowToRed", and "Black".
`heatmapMax` | numeric, maximum value for heatmap plot, set to NULL to use the biggest value in input data set.
`heatmapMin` | numeric, minimum value for heatmap plot, set to NULL to use the smallest value in input data set.

### Value

None

### Author(s)

Henry Zhang

### Examples

        data(bionetPlotDemoData)
        plotBioNetCircos(bionetPlotDemoData)

[Package caOmicsV version 1.14.0 Index]