bioNetCircosPlot {caOmicsV} | R Documentation

## caOmicsV bioNetCircos Layout Plot

### Description

Plot one track of caOmics data on each node of a biological network. Supported plot types include polygon, bar, points, heatmap, and lines.

### Usage

        bioNetCircosPlot(dataValues=NULL, plotType="polygon", outer, inner,
                plotColors=NULL, maxValue=NULL, minValue=NULL)

### Arguments

`dataValues` | an numeric matrix with columns for samples and rows for genes
`plotType` | character vector for plot type, supporting polygon, points, and lines.
`outer` | non-negative numeric, outer location of a data track
`inner` | non-negative numeric, inner location of a data track
`plotColors` | character vector specifying colors for plot items
`maxValue` | numeric, the biggest value of plot data or user defined top threshold. Set to NULL to use the biggest value in dataset.
`minValue` | numeric, the smallest value of plot data or user defined bottom threshold. Set to NULL to use the smallest value in dataset.

### Value

None

### Author(s)

Henry Zhang

### Examples

        data(bionetPlotDemoData)
        expr <- bionetPlotDemoData$heatmapData[[1]]
        bioNet <- bc3net(expr)
        initializeBioNetCircos(bioNet, totalSamples=60)
        showBioNetNodesLayout()

        binaryData <- bionetPlotDemoData$binaryData[[1]]
        sampleColors <- c(rep("blue", ncol(binaryData)))
        plotType <- "points"
        inner <- 2
        outer <- 3
        bioNetCircosPlot(binaryData, plotType, outer, inner, sampleColors)

[Package caOmicsV version 1.14.0 Index]