Load an ENCODE gene expression data

Description

Load an ENCODE gene expression data

Usage

prepareENCODEgeneExpression(samples)

Arguments

Value

Data frame containing gene read counts

Examples

data("ENCODEsamples")
## Download ENCODE metadata for a specific cell line and gene
# cellLine <- "HepG2"
# gene <- "EIF4G1"
# ENCODEmetadata <- downloadENCODEknockdownMetadata(cellLine, gene)

## Download samples based on filtered ENCODE metadata
# ENCODEsamples <- downloadENCODEsamples(ENCODEmetadata)

prepareENCODEgeneExpression(ENCODEsamples)